STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRT75378.1Intradiol ring-cleavage dioxygenase. (152 aa)    
Predicted Functional Partners:
KRT66349.1
Oxidoreductase-like protein, anthraniloyl-CoA monooxygenase.
 
  
 0.854
KRT68233.1
Glutaconate CoA-transferase.
  
 
 0.810
KRT68098.1
Lactaldehyde reductase.
 
  
 0.793
rnhB
Ribonuclease HII, ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.773
KRT75189.1
Adenylosuccinate lyase, adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
 
 0.761
KRT75410.1
Carboxymuconolactone decarboxylase, 4-carboxymuconolactone decarboxylase.
 
 
 0.727
KRT68126.1
Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
  
  
 0.727
rplS
50S ribosomal protein L19, large subunit ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
       0.718
KRT71657.1
Betaine-aldehyde dehydrogenase.
     
 0.684
fdxB
2Fe-2S ferredoxin, ferredoxin, 2Fe-2S.
  
 
 0.678
Your Current Organism:
Rokubacteria bacterium CSP16
NCBI taxonomy Id: 1640509
Other names: C. Rokubacteria bacterium CSP1-6, Candidatus Rokubacteria bacterium CSP1-6, bacterium CSP1-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.