STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRT75307.1L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family. (400 aa)    
Predicted Functional Partners:
KRT71354.1
Indolepyruvate ferredoxin oxidoreductase.
    
 0.635
KRT75305.1
Citrate lyase subunit beta, citrate lyase subunit beta / citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.563
KRT72144.1
Acetyl-CoA acetyltransferase-like protein, acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
    
 0.552
KRT72145.1
Hypothetical protein.
    
 0.552
KRT75308.1
Extracellular ligand-binding receptor, branched-chain amino acid transport system substrate-binding protein.
       0.528
KRT72259.1
Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
    
  0.512
KRT72196.1
Pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein, 2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.512
KRT75185.1
Riboflavin biosynthesis protein RibF, riboflavin kinase / FMN adenylyltransferase; Belongs to the ribF family.
   
 
  0.508
KRT68229.1
Lysine/arginine/ornithine transport system kinase, LAO/AO transport system kinase.
    
  0.493
sucD
succinyl-CoA synthetase, alpha subunit, succinyl-CoA synthetase alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.
   
  0.419
Your Current Organism:
Rokubacteria bacterium CSP16
NCBI taxonomy Id: 1640509
Other names: C. Rokubacteria bacterium CSP1-6, Candidatus Rokubacteria bacterium CSP1-6, bacterium CSP1-6
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