KRT75078.1 protein (Rokubacteria bacterium CSP16)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRT75078.1

UspA domain-containing protein. (303 aa)

Predicted Functional Partners:

KRT75076.1

0.853

KRT75080.1

0.832

KRT75079.1

0.831

KRT75077.1

0.791

KRT75073.1

0.781

KRT75070.1

0.778

KRT75075.1

0.745

KRT75074.1

0.703

KRT75071.1

0.679

KRT75072.1

0.679

Your Current Organism:

Rokubacteria bacterium CSP16

NCBI taxonomy Id: 1640509
Other names: C. Rokubacteria bacterium CSP1-6, Candidatus Rokubacteria bacterium CSP1-6, bacterium CSP1-6

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRT75070.1	KRT75071.1	XU13_C0005G0023	XU13_C0005G0024	eRF1 domain-containing protein.	Hypothetical protein.	0.773
KRT75070.1	KRT75072.1	XU13_C0005G0023	XU13_C0005G0025	eRF1 domain-containing protein.	Hypothetical protein.	0.773
KRT75070.1	KRT75073.1	XU13_C0005G0023	XU13_C0005G0026	eRF1 domain-containing protein.	UspA domain-containing protein.	0.824
KRT75070.1	KRT75074.1	XU13_C0005G0023	XU13_C0005G0027	eRF1 domain-containing protein.	Hypothetical protein.	0.746
KRT75070.1	KRT75075.1	XU13_C0005G0023	XU13_C0005G0028	eRF1 domain-containing protein.	Hypothetical protein.	0.821
KRT75070.1	KRT75076.1	XU13_C0005G0023	XU13_C0005G0029	eRF1 domain-containing protein.	Putative sigma 54 modulation protein/30S ribosomal protein S30EA.	0.715
KRT75070.1	KRT75077.1	XU13_C0005G0023	XU13_C0005G0030	eRF1 domain-containing protein.	biotin--acetyl-CoA-carboxylase ligase, BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase.	0.679
KRT75070.1	KRT75078.1	XU13_C0005G0023	XU13_C0005G0031	eRF1 domain-containing protein.	UspA domain-containing protein.	0.778
KRT75070.1	KRT75079.1	XU13_C0005G0023	XU13_C0005G0032	eRF1 domain-containing protein.	UspA domain-containing protein.	0.778
KRT75070.1	KRT75080.1	XU13_C0005G0023	XU13_C0005G0033	eRF1 domain-containing protein.	UspA domain-containing protein.	0.778
KRT75071.1	KRT75070.1	XU13_C0005G0024	XU13_C0005G0023	Hypothetical protein.	eRF1 domain-containing protein.	0.773
KRT75071.1	KRT75072.1	XU13_C0005G0024	XU13_C0005G0025	Hypothetical protein.	Hypothetical protein.	0.773
KRT75071.1	KRT75073.1	XU13_C0005G0024	XU13_C0005G0026	Hypothetical protein.	UspA domain-containing protein.	0.746
KRT75071.1	KRT75074.1	XU13_C0005G0024	XU13_C0005G0027	Hypothetical protein.	Hypothetical protein.	0.746
KRT75071.1	KRT75075.1	XU13_C0005G0024	XU13_C0005G0028	Hypothetical protein.	Hypothetical protein.	0.741
KRT75071.1	KRT75076.1	XU13_C0005G0024	XU13_C0005G0029	Hypothetical protein.	Putative sigma 54 modulation protein/30S ribosomal protein S30EA.	0.684
KRT75071.1	KRT75077.1	XU13_C0005G0024	XU13_C0005G0030	Hypothetical protein.	biotin--acetyl-CoA-carboxylase ligase, BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase.	0.679
KRT75071.1	KRT75078.1	XU13_C0005G0024	XU13_C0005G0031	Hypothetical protein.	UspA domain-containing protein.	0.679
KRT75071.1	KRT75079.1	XU13_C0005G0024	XU13_C0005G0032	Hypothetical protein.	UspA domain-containing protein.	0.679
KRT75071.1	KRT75080.1	XU13_C0005G0024	XU13_C0005G0033	Hypothetical protein.	UspA domain-containing protein.	0.679