STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hpfSigma 54 modulation protein/ribosomal protein S30EA, putative sigma-54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (182 aa)    
Predicted Functional Partners:
rpmC
50S ribosomal protein L29, large subunit ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
  
 
 
 0.970
rpsU
30S ribosomal protein S21, small subunit ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.967
rpsI
30S ribosomal protein S9, small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.965
rpmA
50S ribosomal protein L27, large subunit ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.965
rpmH
50S ribosomal protein L34, large subunit ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
   
 
 0.964
rpsP
30S ribosomal protein S16, small subunit ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
    
 
 0.962
rpsE
30S ribosomal protein S5, small subunit ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
    
 
 0.962
rplO
50S ribosomal protein L15, large subunit ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
    
 
 0.962
rpsT
30S ribosomal protein S20, small subunit ribosomal protein S20; Binds directly to 16S ribosomal RNA.
   
   0.962
rpsD
30S ribosomal protein S4, small subunit ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
 
 0.961
Your Current Organism:
Rokubacteria bacterium CSP16
NCBI taxonomy Id: 1640509
Other names: C. Rokubacteria bacterium CSP1-6, Candidatus Rokubacteria bacterium CSP1-6, bacterium CSP1-6
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