STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRT73833.1TRAP dicarboxylate transporter subunit DctM. (187 aa)    
Predicted Functional Partners:
KRT69184.1
Hypothetical protein.
 
 0.991
dctQ
Putative transporter related transmembrane protein.
 
 0.986
KRT73831.1
Putative substrate-binding component of transporter.
 
 
 0.962
KRT69185.1
Putative exported solute binding protein.
 
 
 0.920
KRT72449.1
Hypothetical protein.
 
  
  0.899
KRT70844.1
TRAP dicarboxylate transporter subunit DctP.
 
  
  0.860
KRT68147.1
C4-dicarboxylate-binding protein.
 
  
  0.837
KRT68146.1
Hypothetical protein.
 
  
  0.775
KRT72450.1
Tripartite ATP-independent periplasmic transporter DctQ component.
 
  
  0.752
KRT70845.1
Tripartite AtP-independent periplasmic transporter subunit DctQ.
 
  
  0.739
Your Current Organism:
Rokubacteria bacterium CSP16
NCBI taxonomy Id: 1640509
Other names: C. Rokubacteria bacterium CSP1-6, Candidatus Rokubacteria bacterium CSP1-6, bacterium CSP1-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.