STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nifSnifS-1, class-V aminotransferase, cysteine desulfurase. (403 aa)    
Predicted Functional Partners:
nifU
nifU protein.
 
 0.996
iscU
Iron-sulfur cluster assembly protein IscU, nitrogen fixation protein NifU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
 
 0.995
KRT67893.1
NifU family SUF system FeS assembly protein, nitrogen fixation protein NifU.
  
 0.994
fdxB
2Fe-2S ferredoxin, ferredoxin, 2Fe-2S.
  
 0.987
KRT71906.1
SirA family protein; Belongs to the sulfur carrier protein TusA family.
   
 0.987
KRT72839.1
Thioredoxin-like protein.
  
 0.986
KRT74514.1
SirA-like protein domain-containing protein; Belongs to the sulfur carrier protein TusA family.
   
 0.947
KRT72658.1
Redox protein, regulator of disulfide bond formation, tRNA 2-thiouridine synthesizing protein A; Belongs to the sulfur carrier protein TusA family.
   
 0.947
KRT72541.1
SirA family protein; Belongs to the sulfur carrier protein TusA family.
   
 0.947
KRT72547.1
SirA-like protein domain-containing protein; Belongs to the sulfur carrier protein TusA family.
   
 0.947
Your Current Organism:
Rokubacteria bacterium CSP16
NCBI taxonomy Id: 1640509
Other names: C. Rokubacteria bacterium CSP1-6, Candidatus Rokubacteria bacterium CSP1-6, bacterium CSP1-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.