STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygjDO-sialoglycoprotein endopeptidase, with actin-like protein ATPase domain (ygjD,gcp); Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. (334 aa)    
Predicted Functional Partners:
KRT68531.1
Peptidase M22, glycoprotease.
 
 0.998
KRT68527.1
Hypothetical protein.
 0.997
KRT69740.1
Sua5/YciO/YrdC/YwlC family protein; Belongs to the SUA5 family.
 
 
 0.795
KRT68134.1
Alanine racemase, alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
    
  0.695
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
    
 0.687
KRT69866.1
Hypothetical protein.
  
 
 0.683
KRT68821.1
Acetyltransferase.
  
 
 0.683
KRT68532.1
Ribosomal-protein-alanine acetyltransferase, RimI-like protein; Acetylates the N-terminal alanine of ribosomal protein S18.
  
 
 0.683
KRT68568.1
Transcriptional regulator.
    
  0.668
acpS
Acyl carrier protein synthase, ACP-CoA phosphopantetheinyltransferase, Holo-ACP synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.
    
  0.664
Your Current Organism:
candidate division NC10 bacterium CSP15
NCBI taxonomy Id: 1640516
Other names: c. division NC10 bacterium CSP1-5, candidate division NC10 bacterium CSP1-5
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