STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN05216323_1002102Zn-dependent amino-or carboxypeptidase, M28 family. (589 aa)    
Predicted Functional Partners:
SAMN05216323_102437
ABC-type multidrug transport system, ATPase and permease component.
    
 0.821
SAMN05216323_10773
ATP-binding cassette, subfamily B, MsbA.
    
 0.821
SAMN05216323_101228
Uridine kinase.
   
 
  0.820
SAMN05216323_103237
Uridine kinase.
   
 
  0.820
SAMN05216323_10098
Por secretion system C-terminal sorting domain-containing protein.
 
 
 0.808
secD
Protein-export membrane protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
  
 
 0.799
SAMN05216323_101020
Signal transduction histidine kinase.
  
 0.791
SAMN05216323_101146
3-oxoacyl-[acyl-carrier-protein] reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 0.785
SAMN05216323_105423
Benzil reductase ((S)-benzoin forming).
   
 0.785
SAMN05216323_107910
Enoyl-(Acyl carrier protein) reductase.
   
 0.785
Your Current Organism:
Williamwhitmania taraxaci
NCBI taxonomy Id: 1640674
Other names: Bacteroidales bacterium A7P-90m, DSM 100563, JCM 30888, W. taraxaci, Williamwhitmania taraxaci Pikuta et al. 2017, bacterium A7P-90m, strain A7P-90m
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.