STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN05216323_100320Aspartate ammonia-lyase. (620 aa)    
Predicted Functional Partners:
SAMN05216323_100178
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 0.957
pckA
Phosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA.
  
 
 0.908
SAMN05216323_10817
Glutamyl-tRNA(Gln) amidotransferase subunit D.
  
 
 0.865
SAMN05216323_10851
L-asparaginase.
  
 
 0.865
SAMN05216323_103337
Allosteric NADP-dependent malic enzyme.
  
 
 0.823
SAMN05216323_101242
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
  
 0.810
SAMN05216323_101262
Glycine/D-amino acid oxidase.
  
 
 0.804
SAMN05216323_100854
Succinate dehydrogenase / fumarate reductase iron-sulfur subunit.
  
 
 0.802
SAMN05216323_100651
Oxaloacetate decarboxylase, alpha subunit/pyruvate carboxylase subunit B.
    
 0.798
SAMN05216323_100853
Succinate dehydrogenase subunit A.
 
 
 0.792
Your Current Organism:
Williamwhitmania taraxaci
NCBI taxonomy Id: 1640674
Other names: Bacteroidales bacterium A7P-90m, DSM 100563, JCM 30888, W. taraxaci, Williamwhitmania taraxaci Pikuta et al. 2017, bacterium A7P-90m, strain A7P-90m
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.