STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN05216323_100751Anti-sigma factor antagonist; Belongs to the anti-sigma-factor antagonist family. (119 aa)    
Predicted Functional Partners:
SAMN05216323_100520
Serine/threonine-protein kinase RsbW.
 
 0.982
SAMN05216323_10458
Anti-sigma regulatory factor (Ser/Thr protein kinase).
  
 0.941
SAMN05216323_100463
PAS domain S-box-containing protein.
  
 
 0.931
SAMN05216323_100466
PAS domain S-box-containing protein.
  
 
 0.931
SAMN05216323_101022
Two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC.
  
 
 0.931
SAMN05216323_10921
HPt (Histidine-containing phosphotransfer) domain-containing protein.
  
 
 0.915
SAMN05216323_100470
Phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
   
  0.907
SAMN05216323_10979
Phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
   
  0.907
SAMN05216323_101533
Sigma-B regulation protein RsbU (Phosphoserine phosphatase).
  
  0.880
SAMN05216323_100469
Phospholipid/cholesterol/gamma-HCH transport system permease protein.
   
  0.853
Your Current Organism:
Williamwhitmania taraxaci
NCBI taxonomy Id: 1640674
Other names: Bacteroidales bacterium A7P-90m, DSM 100563, JCM 30888, W. taraxaci, Williamwhitmania taraxaci Pikuta et al. 2017, bacterium A7P-90m, strain A7P-90m
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