STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN05216323_101830Outer membrane cobalamin receptor protein. (632 aa)    
Predicted Functional Partners:
SAMN05216323_101831
40-residue YVTN family beta-propeller repeat-containing protein.
 
     0.917
SAMN05216323_104123
Outer membrane receptor proteins, mostly Fe transport.
  
     0.669
SAMN05216323_101016
Iron complex outermembrane recepter protein.
  
     0.653
SAMN05216323_107312
Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
  0.557
SAMN05216323_102719
TonB family C-terminal domain-containing protein.
  
 
  0.555
SAMN05216323_10767
Iron complex transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
     0.544
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
   
 0.538
SAMN05216323_102419
Iron complex outermembrane recepter protein.
  
     0.524
SAMN05216323_10902
Biopolymer transport protein ExbB.
 
  
 0.485
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
   
  0.483
Your Current Organism:
Williamwhitmania taraxaci
NCBI taxonomy Id: 1640674
Other names: Bacteroidales bacterium A7P-90m, DSM 100563, JCM 30888, W. taraxaci, Williamwhitmania taraxaci Pikuta et al. 2017, bacterium A7P-90m, strain A7P-90m
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