STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN05216323_102223Two component transcriptional regulator, LytTR family. (253 aa)    
Predicted Functional Partners:
SAMN05216323_102222
Histidine kinase.
 
  0.981
SAMN05216323_100179
Two component regulator propeller.
 
  0.919
SAMN05216323_102523
Histidine kinase.
  
  0.895
SAMN05216323_106916
Histidine kinase.
  
  0.895
SAMN05216323_11164
Histidine kinase.
  
  0.895
SAMN05216323_100834
Tetratricopeptide repeat-containing protein.
 
 0.855
SAMN05216323_10404
Two component regulator propeller.
 
  
  0.853
SAMN05216323_100961
CheY chemotaxis protein or a CheY-like REC (Receiver) domain.
    
 0.628
SAMN05216323_102221
Uncharacterized protein.
 
     0.593
SAMN05216323_11174
Two component transcriptional regulator, LytTR family.
  
  
 
0.586
Your Current Organism:
Williamwhitmania taraxaci
NCBI taxonomy Id: 1640674
Other names: Bacteroidales bacterium A7P-90m, DSM 100563, JCM 30888, W. taraxaci, Williamwhitmania taraxaci Pikuta et al. 2017, bacterium A7P-90m, strain A7P-90m
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.