STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN05216323_10399Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. (610 aa)    
Predicted Functional Partners:
SAMN05216323_10398
Predicted transcriptional regulator.
 
 
 0.984
SAMN05216323_105811
Predicted transcriptional regulator.
 
 
 0.932
SAMN05216323_100278
N-acetylmuramoyl-L-alanine amidase.
  
  
  0.658
SAMN05216323_10687
Uncharacterized protein.
  
  
  0.553
SAMN05216323_10397
Uncharacterized protein.
       0.527
SAMN05216323_10349
Outer membrane transport energization protein TonB.
  
  
  0.525
SAMN05216323_10904
Biopolymer transport protein ExbD.
  
     0.517
SAMN05216323_103333
Outer membrane receptor for ferrienterochelin and colicins.
  
     0.499
SAMN05216323_103412
LysM domain-containing protein.
  
     0.499
SAMN05216323_100341
Outer membrane protein TolC.
  
     0.497
Your Current Organism:
Williamwhitmania taraxaci
NCBI taxonomy Id: 1640674
Other names: Bacteroidales bacterium A7P-90m, DSM 100563, JCM 30888, W. taraxaci, Williamwhitmania taraxaci Pikuta et al. 2017, bacterium A7P-90m, strain A7P-90m
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.