STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN05216323_10483Sugar transferase. (512 aa)    
Predicted Functional Partners:
SAMN05216323_103939
Capsular exopolysaccharide family.
 
 
 0.965
SAMN05216323_100126
Protein involved in gliding motility EpsB.
 
 
 0.963
SAMN05216323_10484
Capsule assembly protein Wzi.
 
     0.883
SAMN05216323_10485
O-antigen biosynthesis protein WbqP.
 
  
0.878
SAMN05216323_100153
Uncharacterized protein.
 
     0.671
SAMN05216323_100152
Uncharacterized protein.
 
     0.640
SAMN05216323_10977
Mannose-1-phosphate guanylyltransferase (GDP).
  
 
 0.632
SAMN05216323_100125
Polysaccharide export outer membrane protein.
 
 
 0.597
SAMN05216323_103940
Polysaccharide export outer membrane protein.
  
 
 0.532
SAMN05216323_10546
Uncharacterized nucleotidyltransferase.
  
 
 0.532
Your Current Organism:
Williamwhitmania taraxaci
NCBI taxonomy Id: 1640674
Other names: Bacteroidales bacterium A7P-90m, DSM 100563, JCM 30888, W. taraxaci, Williamwhitmania taraxaci Pikuta et al. 2017, bacterium A7P-90m, strain A7P-90m
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.