SAMN05216323_10694 protein (Williamwhitmania taraxaci)

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

SAMN05216323_10694

Uncharacterized protein. (49 aa)

Predicted Functional Partners:

SAMN05216323_10693

0.744

SAMN05216323_10695

0.723

SAMN05216323_10696

0.703

SAMN05216323_10692

0.618

SAMN05216323_10691

0.473

SAMN05216323_101837

0.471

SAMN05216323_10697

0.460

Your Current Organism:

Williamwhitmania taraxaci

NCBI taxonomy Id: 1640674
Other names: Bacteroidales bacterium A7P-90m, DSM 100563, JCM 30888, W. taraxaci, Williamwhitmania taraxaci Pikuta et al. 2017, bacterium A7P-90m, strain A7P-90m

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
SAMN05216323_101837	SAMN05216323_10694	Peroxiredoxin.	Uncharacterized protein.	0.471
SAMN05216323_10691	SAMN05216323_10692	Uncharacterized protein.	Putative Holin-X, holin superfamily III.	0.682
SAMN05216323_10691	SAMN05216323_10693	Uncharacterized protein.	YtxH-like protein.	0.521
SAMN05216323_10691	SAMN05216323_10694	Uncharacterized protein.	Uncharacterized protein.	0.473
SAMN05216323_10691	SAMN05216323_10695	Uncharacterized protein.	Uncharacterized protein.	0.446
SAMN05216323_10691	SAMN05216323_10696	Uncharacterized protein.	Glycosidase.	0.435
SAMN05216323_10692	SAMN05216323_10691	Putative Holin-X, holin superfamily III.	Uncharacterized protein.	0.682
SAMN05216323_10692	SAMN05216323_10693	Putative Holin-X, holin superfamily III.	YtxH-like protein.	0.762
SAMN05216323_10692	SAMN05216323_10694	Putative Holin-X, holin superfamily III.	Uncharacterized protein.	0.618
SAMN05216323_10692	SAMN05216323_10695	Putative Holin-X, holin superfamily III.	Uncharacterized protein.	0.498
SAMN05216323_10692	SAMN05216323_10696	Putative Holin-X, holin superfamily III.	Glycosidase.	0.485
SAMN05216323_10693	SAMN05216323_10691	YtxH-like protein.	Uncharacterized protein.	0.521
SAMN05216323_10693	SAMN05216323_10692	YtxH-like protein.	Putative Holin-X, holin superfamily III.	0.762
SAMN05216323_10693	SAMN05216323_10694	YtxH-like protein.	Uncharacterized protein.	0.744
SAMN05216323_10693	SAMN05216323_10695	YtxH-like protein.	Uncharacterized protein.	0.649
SAMN05216323_10693	SAMN05216323_10696	YtxH-like protein.	Glycosidase.	0.688
SAMN05216323_10693	SAMN05216323_10697	YtxH-like protein.	Uncharacterized metal-binding protein.	0.419
SAMN05216323_10694	SAMN05216323_101837	Uncharacterized protein.	Peroxiredoxin.	0.471
SAMN05216323_10694	SAMN05216323_10691	Uncharacterized protein.	Uncharacterized protein.	0.473
SAMN05216323_10694	SAMN05216323_10692	Uncharacterized protein.	Putative Holin-X, holin superfamily III.	0.618

page 1 of 2

Network Stats

number of nodes:

11

number of edges:

52

average node degree:

9.45

avg. local clustering coefficient:

0.958

expected number of edges:

20

PPI enrichment p-value:

2.86e-09

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0007165

Signal transduction

6 of 62

1.51

1.91

6.21e-06

GO:0000160

Phosphorelay signal transduction system

5 of 52

1.51

1.66

5.65e-05

GO:0050794

Regulation of cellular process

9 of 253

1.08

1.24

2.38e-06

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0004673

Protein histidine kinase activity

5 of 25

1.83

2.27

8.43e-06

GO:0000155

Phosphorelay sensor kinase activity

4 of 24

1.75

1.79

0.00011

GO:0016772

Transferase activity, transferring phosphorus-containing groups

7 of 171

1.14

1.22

2.82e-05

GO:0016740

Transferase activity

9 of 591

0.71

0.61

0.00028

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005886

Plasma membrane

7 of 579

0.61

0.36

0.0471

GO:0016021

Integral component of membrane

8 of 769

0.54

0.33

0.0471

GO:0016020

Membrane

9 of 1176

0.41

0.28

0.0471

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:2148

Phosphorelay signal transduction system, and RNA polymerase sigma factor 54 interaction domain

11 of 41

1.96

6.07

1.09e-18

CL:2155

Mixed, incl. PAS domain, and Phosphoric diester hydrolase activity

8 of 21

2.11

5.5

6.46e-14

CL:2161

PAS-associated, C-terminal, and Bacterial chemotaxis

6 of 10

2.31

4.88

6.39e-11

CL:2163

Diguanylate cyclase, and Regulation of signaling

3 of 5

2.31

2.21

5.90e-05

CL:2215

Sigma-54 interaction domain, ATP-binding site 1, and PAS fold

3 of 7

2.16

2.01

0.00012

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map02020

Two-component system

10 of 277

1.08

1.42

8.29e-09

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0418

Kinase

4 of 74

1.26

0.79

0.0122

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR001610

PAC motif

4 of 8

2.23

2.3

3.24e-05

IPR035965

PAS domain superfamily

4 of 10

2.13

2.26

3.27e-05

IPR000014

PAS domain

4 of 10

2.13

2.26

3.27e-05

IPR004358

Signal transduction histidine kinase-related protein, C-terminal

4 of 17

1.9

1.92

9.67e-05

IPR005467

Histidine kinase domain

4 of 20

1.83

1.81

0.00014

(more ...)

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00086

Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)

4 of 9

2.17

2.71

3.74e-06

SM00091

PAS domain

4 of 11

2.09

2.64

3.74e-06

SM00388

His Kinase A (phosphoacceptor) domain

4 of 17

1.9

2.31

1.03e-05

SM00387

Histidine kinase-like ATPases

4 of 22

1.79

2.1

1.92e-05

SM00065

Domain present in phytochromes and cGMP-specific phosphodiesterases.

2 of 5

2.13

1.25

0.0042

(more ...)

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