Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| XD89_0401 | XD89_0728 | XD89_0401 | XD89_0728 | 30S ribosomal protein S2. | 30S ribosomal protein S7. | 0.999 |
| XD89_0401 | XD89_0954 | XD89_0401 | XD89_0954 | 30S ribosomal protein S2. | DNA-directed RNA polymerase subunit beta'. | 0.982 |
| XD89_0401 | XD89_0955 | XD89_0401 | XD89_0955 | 30S ribosomal protein S2. | DNA-directed RNA polymerase subunit beta'. | 0.978 |
| XD89_0401 | rplB | XD89_0401 | XD89_0175 | 30S ribosomal protein S2. | rplB; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.997 |
| XD89_0401 | rplV | XD89_0401 | XD89_0173 | 30S ribosomal protein S2. | 50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.997 |
| XD89_0401 | rplX | XD89_0401 | XD89_0167 | 30S ribosomal protein S2. | 50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.999 |
| XD89_0401 | rpoA | XD89_0401 | XD89_0564 | 30S ribosomal protein S2. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.995 |
| XD89_0401 | rpoB | XD89_0401 | XD89_0726 | 30S ribosomal protein S2. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.974 |
| XD89_0401 | rpsD | XD89_0401 | XD89_0565 | 30S ribosomal protein S2. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
| XD89_0401 | rpsE | XD89_0401 | XD89_0161 | 30S ribosomal protein S2. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.999 |
| XD89_0728 | XD89_0401 | XD89_0728 | XD89_0401 | 30S ribosomal protein S7. | 30S ribosomal protein S2. | 0.999 |
| XD89_0728 | XD89_0954 | XD89_0728 | XD89_0954 | 30S ribosomal protein S7. | DNA-directed RNA polymerase subunit beta'. | 0.928 |
| XD89_0728 | XD89_0955 | XD89_0728 | XD89_0955 | 30S ribosomal protein S7. | DNA-directed RNA polymerase subunit beta'. | 0.939 |
| XD89_0728 | rplB | XD89_0728 | XD89_0175 | 30S ribosomal protein S7. | rplB; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.998 |
| XD89_0728 | rplV | XD89_0728 | XD89_0173 | 30S ribosomal protein S7. | 50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.998 |
| XD89_0728 | rplX | XD89_0728 | XD89_0167 | 30S ribosomal protein S7. | 50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.998 |
| XD89_0728 | rpoA | XD89_0728 | XD89_0564 | 30S ribosomal protein S7. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.994 |
| XD89_0728 | rpoB | XD89_0728 | XD89_0726 | 30S ribosomal protein S7. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.991 |
| XD89_0728 | rpsD | XD89_0728 | XD89_0565 | 30S ribosomal protein S7. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
| XD89_0728 | rpsE | XD89_0728 | XD89_0161 | 30S ribosomal protein S7. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.999 |
page 1 of 6