STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCM55152.1Could be part of an ABC transporter complex. pass membrane protein; sp|Q1RGU3|Y1340_RICBR;evalue=9e-030; PctID=33.05; score=130. (257 aa)    
Predicted Functional Partners:
mkl
Putative ribonucleotide transport ATP-binding protein mkl; Not known, could be involved in the transport of ribonucleotides. Sequence=CAC30846.1; Type=Erroneous initiation; Evidence=; sp|P30769|MKL_MYCLE;evalue=6e-037; PctID=35.17; score=154.
 
 0.999
SCM59881.1
Putative membrane protein {ECO:0000313|EMBL:CEA17179,1}; tr|A0A098C2N3|A0A098C2N3_9PORP;evalue=1e-084; PctID=51.52; score=319.
 
 0.994
lptB
Lipopolysaccharide export system ATP-binding protein LptB; Part of the ABC transporter complex LptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane. Probably responsible for energy coupling to the transport system (By similarity). assembly complex. The LptBFG transporter is composed of two ATP-binding proteins and two transmembrane proteins (LptF and LptG) (By similarity); Peripheral membrane protein; Cytoplasmic side membrane lipopolysaccharide export (TC 1.B.42) family; sp|P24693|LPTB_ACIFR;evalue=4e-071; PctID=53.78; score=268.
 
  
  0.761
SCM56762.1
Transporter, MotA/TolQ/ExbB proton channel family protein {ECO:0000313|EMBL:CEA16323,1}; tr|A0A098C1N0|A0A098C1N0_9PORP;evalue=2e-079; PctID=71.17; score=301.
  
   
 0.671
SCM55113.1
Putative protein {ECO:0000313|EMBL:CEA16782,1}; tr|A0A098C4C7|A0A098C4C7_9PORP;evalue=3e-161; PctID=78.37; score=574.
 
   
 0.618
lpxB
Lipid-A-disaccharide synthase {ECO:0000255|HAMAP-Rule:MF_00392}; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
  
    0.577
ycf16
Putative ATP-dependent transporter ycf16; sp|P48255|ABCX_CYAPA;evalue=1e-082; PctID=59.02; score=306.
     
 0.570
sufD
FeS cluster assembly protein SufD; The SufBCD complex acts synergistically with SufE to stimulate the cysteine desulfurase activity of SufS. The SufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake from extracellular iron chelators under iron limitation. Required for the stability of the FhuF protein. SufD. Can form homodimers. P77522:sufB; NbExp=13; IntAct=EBI-562751, EBI-562758; P77499:sufC; NbExp=8; IntAct=EBI-562751, EBI-561601; sp|P77689|SUFD_ECOLI;evalue=9e-028; PctID=32.97; score=125.
     
 0.568
SCM55148.1
Putative cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
       0.561
lpxD
UDP-3-O-acylglucosamine N-acyltransferase {ECO:0000255|HAMAP-Rule:MF_00523}; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.
 
     0.558
Your Current Organism:
Petrimonas mucosa
NCBI taxonomy Id: 1642646
Other names: CECT 8611, DSM 28695, P. mucosa, Petrimonas mucosa Hahnke et al. 2016, Petrimonas sp. ING2-E5A, strain ING2 E5A, strain ING2-E5A
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.