STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCM55376.1Putative oxidoreductase PA3106; sp|Q51576|Y3106_PSEAE;evalue=9e-035; PctID=36.80; score=147. (246 aa)    
Predicted Functional Partners:
mdmC
4-O-methyltransferase for the lactone ring of midecamycin and other macrolide antibiotics. methyltransferase superfamily. Cation-dependent O-methyltransferase family; sp|Q00719|MDMC_STRMY;evalue=3e-023; PctID=34.48; score=108.
  
 
 0.907
fabD
Malonyl CoA-acyl carrier protein transacylase; sp|P71019|FABD_BACSU;evalue=4e-068; PctID=48.08; score=258.
 
 0.732
SCM55377.1
META domain protein {ECO:0000313|EMBL:EFK56880,1}; tr|D7VSX9|D7VSX9_9SPHI;evalue=2e-072; PctID=50.93; score=278.
       0.639
fabF
3-oxoacyl-[acyl-carrier-protein] synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 0.631
lpxC/fabZ
Bifunctional enzyme LpxC/FabZ; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
  
 
 0.540
agaR
Probable repressor for the aga operon for N-acetyl galactosamine transport and metabolism; sp|P0ACK2|AGAR_ECOLI,sp|P0ACK3|AGAR_ECOL6, sp|P0ACK4|AGAR_ECO57;evalue=5e-029; PctID=29.46; score=128.
  
  
 0.539
guaB
Inosine-5'-monophosphate dehydrogenase {ECO:0000255|HAMAP-Rule:MF_01964}; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
  
 
 0.497
nifJ
Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. CoA + CO(2) + reduced flavodoxin. Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; Evidence=; Note=Binds 3 [4Fe-4S] clusters per subunit; sp|P03833|NIFJ_KLEPN;evalue=0.0; PctID=57.00; score=1316.
   
 
 0.495
mucD
Putative periplasmic serine endoprotease DegP-like; Might be efficient in the degradation of transiently denatured and unfolded proteins which accumulate in the periplasm following stress conditions. unfolded. The cleavage site P1 residue is normally between a pair of hydrophobic residues, such as Val-|-Val. ProRule:PRU00143}; sp|Q2SL36|DEGPL_HAHCH;evalue=4e-067; PctID=37.94; score=256.
 
 0.452
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 
 0.445
Your Current Organism:
Petrimonas mucosa
NCBI taxonomy Id: 1642646
Other names: CECT 8611, DSM 28695, P. mucosa, Petrimonas mucosa Hahnke et al. 2016, Petrimonas sp. ING2-E5A, strain ING2 E5A, strain ING2-E5A
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