STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCM55394.1Putative protein {ECO:0000313|EMBL:CEA17042,1}; tr|A0A098C549|A0A098C549_9PORP;evalue=4e-059; PctID=83.87; score=233. (124 aa)    
Predicted Functional Partners:
ycbL
Putative protein YcbL; sp|P75849|YCBL_ECOLI;evalue=4e-028; PctID=40.38; score=124.
    
 0.906
SCM55393.1
Putative protein {ECO:0000313|EMBL:CEA17041,1}; tr|A0A098C3M1|A0A098C3M1_9PORP;evalue=6e-082; PctID=57.26; score=310.
 
    0.874
SCM56604.1
Putative NADH dehydrogenase/NAD(P)H nitroreductase AF_2267; sp|O28017|Y2267_ARCFU;evalue=1e-013; PctID=31.82; score=75.9.
 
  
 0.843
trpB
Tryptophan synthase beta chain {ECO:0000255|HAMAP-Rule:MF_00133}; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
   
  0.828
sdaA
L-serine dehydratase; sp|O86564|SDHL_STRCO;evalue=1e-065; PctID=42.69; score=250; Belongs to the iron-sulfur dependent L-serine dehydratase family.
   
 
  0.805
trpA
Tryptophan synthase alpha chain {ECO:0000255|HAMAP-Rule:MF_00131}; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
     
  0.800
trpB2
Tryptophan synthase beta chain 2; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
     
  0.800
SCM59854.1
Putative protein {ECO:0000313|EMBL:CEA14702,1}; tr|A0A098BXD8|A0A098BXD8_9PORP;evalue=7e-123; PctID=70.57; score=446.
  
     0.763
SCM59855.1
Putative protein {ECO:0000313|EMBL:CEA14704,1}; tr|A0A098BVZ8|A0A098BVZ8_9PORP;evalue=7e-071; PctID=47.96; score=273.
  
     0.722
nifJ
Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. CoA + CO(2) + reduced flavodoxin. Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; Evidence=; Note=Binds 3 [4Fe-4S] clusters per subunit; sp|P03833|NIFJ_KLEPN;evalue=0.0; PctID=57.00; score=1316.
  
  
 0.669
Your Current Organism:
Petrimonas mucosa
NCBI taxonomy Id: 1642646
Other names: CECT 8611, DSM 28695, P. mucosa, Petrimonas mucosa Hahnke et al. 2016, Petrimonas sp. ING2-E5A, strain ING2 E5A, strain ING2-E5A
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