STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mepA3Multidrug resistance efflux protein. membrane protein (TC 2.A.66.1) family. MepA subfamily. Sequence=BAE03985.1; Type=Erroneous termination; Positions=101; Note=Translated as Tyr; Evidence=; Sequence=BAE03986.1; Type=Erroneous termination; Positions=101; Note=Translated as Tyr.; Evidence=; sp|Q4L8N9|MEPA_STAHJ;evalue=1e-042; PctID=26.37; score=174. (457 aa)    
Predicted Functional Partners:
norM
Multidrug efflux pump. membrane protein (TC 2.A.66.1) family; sp|Q9WZS2|NORM_THEMA;evalue=2e-021; PctID=25.37; score=104.
  
     0.626
GAPC
Glyceraldehyde-3-phosphate dehydrogenase, cytosolic; Key enzyme in glycolysis that catalyzes the first step of the pathway by converting D-glyceraldehyde 3-phosphate (G3P) into 3-phospho-D-glyceroyl phosphate. Essential for the maintenance of cellular ATP levels and carbohydrate metabolism (By similarity). NAD(+) = 3-phospho-D-glyceroyl phosphate + NADH. glyceraldehyde 3-phosphate: step 1/5. which participate in glycolysis and chloroplast forms which participate in photosynthesis. All the forms are encoded by distinct genes. dehydrogenase family; sp|Q42671|G3PC_CRAPL;evalue=9e-128; Pct [...]
  
  
 0.527
rpsA
30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence (By similarity). ProRule:PRU00180}; sp|Q9Z8M3|RS1_CHLPN;evalue=2e-115; PctID=40.51; score=416.
  
    0.509
dinF
DNA-damage-inducible protein F; sp|P28303|DINF_ECOLI;evalue=2e-052; PctID=32.48; score=206.
  
     0.468
SCM55986.1
Putative protein ORF8 in nfe locus; sp|Q52991|YNF8_RHIML;evalue=9e-030; PctID=39.89; score=131.
       0.462
Your Current Organism:
Petrimonas mucosa
NCBI taxonomy Id: 1642646
Other names: CECT 8611, DSM 28695, P. mucosa, Petrimonas mucosa Hahnke et al. 2016, Petrimonas sp. ING2-E5A, strain ING2 E5A, strain ING2-E5A
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