STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCM56283.1UPF0001 protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family. (220 aa)    
Predicted Functional Partners:
SCM59847.1
Maf-like protein BVU_2498 {ECO:0000255|HAMAP-Rule:MF_00528}; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
    0.808
SCM56281.1
Putative protein {ECO:0000313|EMBL:CEA17089,1}; tr|A0A098C2G0|A0A098C2G0_9PORP;evalue=2e-063; PctID=85.00; score=247.
       0.805
ylmD
Laccase domain protein YlmD; sp|O31726|YLMD_BACSU;evalue=8e-030; PctID=32.02; score=130; Belongs to the multicopper oxidase YfiH/RL5 family.
 
  
 0.705
murF-2
UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase {ECO:0000255|HAMAP-Rule:MF_02019}; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
  
 0.619
pyrD1
Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit; Catalyzes the conversion of dihydroorotate to orotate.
     
 0.559
oxyR
Required for the induction of a regulon of hydrogen peroxide inducible genes such as catalase and glutathione-reductase; sp|P44418|OXYR_HAEIN;evalue=5e-037; PctID=32.89; score=155; Belongs to the LysR transcriptional regulatory family.
       0.556
yaaT
Stage 0 sporulation protein YaaT; Essential for the phosphorelay during initiation of sporulation. May control the level of phosphorylated spo0A through spo0E activity during sporulation. localized throughout the periphery of the cell and the division septum. In the sporulation stages, fluorescence of the YaaT-GFP fusion protein was observed as two dots at the sides of an asymmetric septum and at the edges of the forespore; sp|P37541|YAAT_BACSU;evalue=7e-031; PctID=38.14; score=135.
 
     0.529
murF
UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase {ECO:0000255|HAMAP-Rule:MF_02019}; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
  
    0.529
rpmJ
50S ribosomal protein L36 {ECO:0000255|HAMAP-Rule:MF_00251}; sp|B2RLW9|RL36_PORG3, sp|Q7MTN6|RL36_PORGI;evalue=5e-013; PctID=86.84; score=73.2; Belongs to the bacterial ribosomal protein bL36 family.
  
    0.526
rpmC
50S ribosomal protein L29 {ECO:0000255|HAMAP-Rule:MF_00374}; sp|A6LEI3|RL29_PARD8;evalue=2e-009; PctID=52.46; score=61.2; Belongs to the universal ribosomal protein uL29 family.
   
    0.521
Your Current Organism:
Petrimonas mucosa
NCBI taxonomy Id: 1642646
Other names: CECT 8611, DSM 28695, P. mucosa, Petrimonas mucosa Hahnke et al. 2016, Petrimonas sp. ING2-E5A, strain ING2 E5A, strain ING2-E5A
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