STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCM56414.1Sigma factor regulatory protein, FecR/PupR family {ECO:0000313|EMBL:BAR51454,1}; tr|A0A0E4BGY6|A0A0E4BGY6_TANFO;evalue=1e-081; PctID=43.77; score=310. (396 aa)    
Predicted Functional Partners:
algU1
RNA polymerase sigma-H factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes such as algD, involved in alginate biosynthesis; sp|Q06198|RPSH_PSEAE;evalue=4e-007; PctID=24.26; score=54.7; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.784
SCM55316.1
Putative RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:GAO43523,1}; tr|A0A0E9N1A5|A0A0E9N1A5_9SPHI;evalue=2e-022; PctID=33.71; score=111; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.778
SCM55368.1
RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:GAE15210,1}; tr|W4P658|W4P658_9BACE,tr|W4PG94|W4PG94_9BACE; evalue=5e-043; PctID=51.74; score=179; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.776
SCM55650.1
Putative protein {ECO:0000313|EMBL:EKN09017,1}; tr|K5Y745|K5Y745_9PORP;evalue=6e-029; PctID=29.93; score=134.
  
     0.774
SCM59705.1
Hypothetical protein; Evalue=; PctID=; score=.
 
   0.763
SCM55158.1
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:KKB57071,1}; tr|A0A0F5JH02|A0A0F5JH02_9PORP, tr|S0GFW8|S0GFW8_9PORP;evalue=1e-059; PctID=61.88; score=234; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.732
SCM59331.1
Sigma-70 region 2 {ECO:0000313|EMBL:AEW21168,1}; tr|G8UQ00|G8UQ00_TANFA;evalue=2e-064; PctID=68.18; score=250; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.725
fecI
Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates the fec genes for iron dicitrate transport (probable); sp|P23484|FECI_ECOLI;evalue=3e-009; PctID=29.14; score=61.6; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.658
SCM55646.1
RNA polymerase sigma-70 factor, expansion family 1 {ECO:0000313|EMBL:EKN13040,1}; tr|K5ZP13|K5ZP13_9PORP;evalue=4e-031; PctID=39.39; score=140; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.639
sigZ
RNA polymerase sigma factor SigZ; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sp|O05409|SIGZ_BACSU;evalue=3e-007; PctID=24.82; score=55.1; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.627
Your Current Organism:
Petrimonas mucosa
NCBI taxonomy Id: 1642646
Other names: CECT 8611, DSM 28695, P. mucosa, Petrimonas mucosa Hahnke et al. 2016, Petrimonas sp. ING2-E5A, strain ING2 E5A, strain ING2-E5A
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