STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCM56503.1Putative protein {ECO:0000313|EMBL:EHB93456,1}; tr|G5H5L7|G5H5L7_9BACT;evalue=0.0; PctID=67.42; score=696; Belongs to the glycosyl hydrolase 28 family. (495 aa)    
Predicted Functional Partners:
rhgT
Rhamnogalacturonan acetylesterase RhgT; May play a role in the degradation of type I rhamnogalacturonan derived from plant cell walls. This enzyme has a broad substrate specificity, and shows strong preference for glucose pentaacetate, beta-naphthylacetate, and p-nitrophenyl acetate (pNPA). Also active toward acetylated xylan. diethylpyrocarbonate at 5 mM and completely inhibited by phenylmethylsulfonyl fluoride (PMSF) at 50 mM. Dimethyl phosphite achieves only a 53% inhibition. Also inhibited by metal ions (magnesium, manganese and calcium) and chelating agent (EDTA) at the same level [...]
 
 0.862
yteR
Unsaturated rhamnogalacturonyl hydrolase YteR; Catalyzes the hydrolysis of unsaturated rhamnogalacturonan disaccharide to yield unsaturated D-galacturonic acid and L-rhamnose. It cannot act on unsaturated glucuronyl hydrolase (UGL) substrates containing unsaturated D-glucuronic acid at the non-reducing terminus, although the active pockets of YesR and UGL are very similar. enopyranuronosyl)-alpha-L-rhamnopyranose + H(2)O = 5-dehydro-4-deoxy-D-glucuronate + L-rhamnopyranose. Kinetic parameters: KM=100 uM for unsaturated rhamnogalacturonan disaccharide (at pH 4 and 30 degrees Celsius); p [...]
     0.783
SCM55434.1
Putative protein {ECO:0000313|EMBL:EHL82430,1}; tr|G9S6N1|G9S6N1_9PORP;evalue=4e-125; PctID=50.95; score=455; Belongs to the glycosyl hydrolase 28 family.
  
     0.765
SCM56507.1
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:BAR48036,1}; tr|A0A0E4BBX1|A0A0E4BBX1_TANFO;evalue=0.0; PctID=65.24; score=1313.
 
    0.765
SCM58771.1
Endo- polygalacturonase{ECO:0000313|EMBL:EFI14659,1}; tr|D7J0Z9|D7J0Z9_9BACE;evalue=2e-125; PctID=49.58; score=456; Belongs to the glycosyl hydrolase 28 family.
  
     0.760
SCM55358.1
Pectinesterase 31; Acts in the modification of cell walls via demethylesterification of cell wall pectin (By similarity). Acts in a blockwise manner, resulting in a cell wall rigidification. inhibited by kiwi pectin methylesterase inhibitor (PMEI). pH dependence: Optimum pH is 8.0-8.5; Temperature dependence: Fully active at 0 or 30 degrees Celsius, inactive at 55 degrees Celsius.; D-gluconate from pectin: step 1/5. siliques. family that do not contain a transmembrane or a signal peptide; sp|Q9LVQ0|PME31_ARATH;evalue=6e-039; PctID=45.00; score=163.
   
 0.747
SCM56495.1
Putative protein {ECO:0000313|EMBL:EKN20892,1}; tr|K5Z2C0|K5Z2C0_9PORP;evalue=0.0; PctID=55.26; score=778.
     0.728
SCM55360.1
Pectinesterase 31; Acts in the modification of cell walls via demethylesterification of cell wall pectin (By similarity). Acts in a blockwise manner, resulting in a cell wall rigidification. inhibited by kiwi pectin methylesterase inhibitor (PMEI). pH dependence: Optimum pH is 8.0-8.5; Temperature dependence: Fully active at 0 or 30 degrees Celsius, inactive at 55 degrees Celsius.; D-gluconate from pectin: step 1/5. siliques. family that do not contain a transmembrane or a signal peptide; sp|Q9LVQ0|PME31_ARATH;evalue=1e-063; PctID=47.69; score=244.
   
 0.712
SCM56501.1
Putative polygalacturonase; sp|A7PZL3|PGLR_VITVI;evalue=8e-007; PctID=37.78; score=54.3; Belongs to the glycosyl hydrolase 28 family.
 
    
0.690
xylS
Alpha-xylosidase; Catalyzes the liberation of alpha-xylose from the non-reducing terminal glucose of xyloglucan oligosaccharides. Has high hydrolytic activity on the disaccharide isoprimeverose. Follows a retaining mechanism of substrate hydrolysis. xylose residues with release of alpha-D-xylose. Kinetic parameters: KM=17 mM for maltose; KM=3.45 mM for maltotriose; KM=28.9 mM for isoprimeverose; KM=1.72 mM for 4-nitrophenyl-beta-isoprimeveroside; pH dependence: Optimum pH is 5.5; Temperature dependence: Optimum temperature is 90 degrees Celsius.; sp|Q9P999|XYLS_SULSO;evalue=7e-027; Pct [...]
 
     0.679
Your Current Organism:
Petrimonas mucosa
NCBI taxonomy Id: 1642646
Other names: CECT 8611, DSM 28695, P. mucosa, Petrimonas mucosa Hahnke et al. 2016, Petrimonas sp. ING2-E5A, strain ING2 E5A, strain ING2-E5A
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