STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rimORibosomal protein S12 methylthiotransferase RimO {ECO:0000255|HAMAP-Rule:MF_01865}; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. (431 aa)    
Predicted Functional Partners:
SCM56586.1
Putative protein {ECO:0000313|EMBL:CEA15140,1}; tr|A0A098BWX3|A0A098BWX3_9PORP;evalue=2e-012; PctID=51.43; score=80.5.
   
   0.822
ftsY
Signal recognition particle receptor FtsY {ECO:0000255|HAMAP-Rule:MF_00920}; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).
  
  
 0.813
rlmN
Putative dual-specificity RNA methyltransferase RlmN {ECO:0000255|HAMAP-Rule:MF_01849}; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
 
  
 0.630
hemN
Oxygen-independent coproporphyrinogen-III oxidase-like protein YqeR; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.570
rpmB
50S ribosomal protein L28 {ECO:0000255|HAMAP-Rule:MF_00373}; sp|A6L9U9|RL28_PARD8;evalue=5e-036; PctID=87.34; score=149; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.560
rpmG
50S ribosomal protein L33 {ECO:0000255|HAMAP-Rule:MF_00294}; sp|Q5LCF6|RL33_BACFN, sp|Q64TK2|RL33_BACFR;evalue=8e-029; PctID=96.77; score=125; Belongs to the bacterial ribosomal protein bL33 family.
     
 0.542
SCM56580.1
Putative protein {ECO:0000313|EMBL:CEA15136,1}; tr|A0A098BY94|A0A098BY94_9PORP;evalue=6e-017; PctID=82.69; score=92.4.
       0.525
SCM56283.1
UPF0001 protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
 
     0.501
fmt
Methionyl-tRNA formyltransferase {ECO:0000255|HAMAP-Rule:MF_00182}; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
 
  
 0.436
def
Peptide deformylase {ECO:0000255|HAMAP-Rule:MF_00163}; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
 
     0.418
Your Current Organism:
Petrimonas mucosa
NCBI taxonomy Id: 1642646
Other names: CECT 8611, DSM 28695, P. mucosa, Petrimonas mucosa Hahnke et al. 2016, Petrimonas sp. ING2-E5A, strain ING2 E5A, strain ING2-E5A
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