STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mreBInvolved in formation of the rod shape of the cell; sp|Q01465|MREB_BACSU;evalue=5e-077; PctID=45.29; score=288. (341 aa)    
Predicted Functional Partners:
SCM57768.1
Rod shape-determining protein MreC {ECO:0000313|EMBL:CEA16075,1}; tr|A0A098BZF9|A0A098BZF9_9PORP;evalue=1e-081; PctID=54.32; score=309.
 
 
 0.982
mrdA
Penicillin-binding protein 2; Cell wall formation; PBP-2 is responsible for the determination of the rod shape of the cell. Its synthesize cross-linked peptidoglycan from the lipid intermediates (By similarity). pass membrane protein (formation of linear glycan strands) and a penicillin-sensitive transpeptidase domain (cross-linking of the peptide subunits); sp|E1WGF1|PBP2_SALTS,sp|P0CL14|PBP2_SALTY;evalue=7e-038; PctID=31.78; score=159.
 
 0.972
mrdB
Rod shape-determining protein RodA; Required for the maintenance of the rod cell shape. Required for the expression of the enzymatic activity of the penicillin-binding protein 2 (PBP2). protein; sp|P0ABG7|RODA_ECOLI,sp|P0ABG8|RODA_ECO57, sp|P0ABG9|RODA_SHIFL;evalue=5e-029; PctID=43.04; score=129; Belongs to the SEDS family.
 
 
 0.962
SCM57770.1
Putative membrane protein {ECO:0000313|EMBL:CEA16074,1}; tr|A0A098BZJ0|A0A098BZJ0_9PORP;evalue=1e-032; PctID=51.37; score=145.
       0.805
ftsZ
Cell division protein FtsZ {ECO:0000255|HAMAP-Rule:MF_00909}; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
  
 
 0.693
pbpB
Penicillin-binding protein PbpB; sp|A0R022|PBPB_MYCS2;evalue=9e-028; PctID=27.95; score=125.
 
 
 0.666
SCM57764.1
Putative protein {ECO:0000313|EMBL:BAR52018,1}; tr|A0A0E4FP30|A0A0E4FP30_TANFO;evalue=4e-107; PctID=60.26; score=394.
       0.631
ftsW
Putative lipid II flippase FtsW {ECO:0000255|HAMAP-Rule:MF_00913}; Essential cell division protein. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane. Rule:MF_00913}; Multi-pass membrane protein Note=Localizes to the division septum; sp|Q21MH0|FTSW_SACD2;evalue=1e-015; PctID=37.06; score=85.1; Belongs to the SEDS family.
 
 
 0.624
tig
Trigger factor {ECO:0000255|HAMAP-Rule:MF_00303}; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase. (omega=0). the ribosome near the polypeptide exit tunnel while the other half is free in the cytoplasm. the middle domain has PPIase activity, while the C-terminus has intrinsic chaperone activity on its own; sp|A8GTZ8|TIG_RICRS,sp|B0BVJ0|TIG_RICRO;evalue=6e-013; PctID=24.00; score=75.9.
  
   0.618
secD
Protein translocase subunit SecD {ECO:0000255|HAMAP-Rule:MF_01463}; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
  
  
 0.615
Your Current Organism:
Petrimonas mucosa
NCBI taxonomy Id: 1642646
Other names: CECT 8611, DSM 28695, P. mucosa, Petrimonas mucosa Hahnke et al. 2016, Petrimonas sp. ING2-E5A, strain ING2 E5A, strain ING2-E5A
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