STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cydACytochrome bd ubiquinol oxidase subunit 1; May be involved in maintaining the low intracellular oxygen concentration required for nitrogen fixation. ubiquinone + 2 H(2)O + n H(+)(Side 2). Name=heme b; Xref=ChEBI:CHEBI:60344; Evidence=; Note=Binds 1 protoheme IX center (heme b558) per subunit; Name=heme b; Xref=ChEBI:CHEBI:60344; Evidence=; Note=Binds 1 protoheme IX center (heme b595) per heterodimer, in conjunction with CydB.; Name=heme d cis-diol; Xref=ChEBI:CHEBI:62814; Evidence=; Note=Binds 1 iron-chlorin (heme d or cytochrome d) per heterodimer, in conjunction with CydB.; protein. [...] (515 aa)    
Predicted Functional Partners:
cydB
Cytochrome bd ubiquinol oxidase subunit 2; sp|P94365|CYDB_BACSU;evalue=2e-011; PctID=33.02; score=70.9.
 
 
 0.999
SCM58805.1
Membrane protein {ECO:0000313|EMBL:KGN76271,1}; tr|A0A0A2EBK6|A0A0A2EBK6_9PORP;evalue=6e-012; PctID=57.89; score=75.9.
 
   
 0.883
SCM59825.1
Succinate dehydrogenase {ECO:0000313|EMBL:KGN98980,1}; tr|A0A0A2G9B6|A0A0A2G9B6_9PORP;evalue=4e-108; PctID=75.30; score=397.
     
 0.586
PRODH
Proline dehydrogenase 1, mitochondrial; Converts proline to delta-1-pyrroline-5-carboxylate. carboxylate + a quinol. Name=FAD; Xref=ChEBI:CHEBI:57692; Evidence=; glutamate; L-glutamate from L-proline: step 1/2. Event=Alternative splicing; Named isoforms=3; Name=1; IsoId=O43272-4; Name=2; IsoId=O43272-2; Sequence=VSP_021848; Name=3; IsoId=O43272-1; Sequence=VSP_040848, VSP_040849; to a lesser extent in heart and kidney, and weakly in liver, placenta and pancreas. of proline metabolism resulting in elevated levels of proline in the plasma and urine. The disorder is generally benign and m [...]
   
 
 0.566
panD
Aspartate 1-decarboxylase {ECO:0000255|HAMAP-Rule:MF_00446}; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
   
  
 0.548
sdhA
Succinate dehydrogenase flavoprotein subunit; sp|P08065|SDHA_BACSU;evalue=8e-037; PctID=31.99; score=155.
     
 0.548
SCM58806.1
Putative protein {ECO:0000313|EMBL:CEA15808,1}; tr|A0A098C063|A0A098C063_9PORP;evalue=1e-038; PctID=79.61; score=164.
       0.534
SCM59823.1
Succinate dehydrogenase subunit C {ECO:0000313|EMBL:ADQ81109,1}; tr|E4T0P5|E4T0P5_PALPW;evalue=1e-077; PctID=61.50; score=295.
     
  0.499
SCM58808.1
Putative protein {ECO:0000313|EMBL:CEA15810,1}; tr|A0A098BYQ4|A0A098BYQ4_9PORP;evalue=2e-020; PctID=51.46; score=103.
  
  
 0.450
pntAA
NAD(P) transhydrogenase subunit alpha part 1; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane. in Rhodospirillum, the alpha chain is made of two subunits (PntAA and PntAB) and forms a dimer; sp|P0C186|PNTAA_RHORU,sp|Q2RSB2|PNTAA_RHORT; evalue=1e-072; PctID=41.42; score=273.
  
  
 0.450
Your Current Organism:
Petrimonas mucosa
NCBI taxonomy Id: 1642646
Other names: CECT 8611, DSM 28695, P. mucosa, Petrimonas mucosa Hahnke et al. 2016, Petrimonas sp. ING2-E5A, strain ING2 E5A, strain ING2-E5A
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