STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCM58934.1Hypothetical protein. (78 aa)    
Predicted Functional Partners:
SCM58935.1
Alpha-L-fucosidase 1; Hydrolyzes both 3-and 4-linked fucoses in Lewis determinants. Not active on neither 2-linked fucose nor on fucose in alpha-1,3-linkage to the innermost GlcNAc. alcohol. Kinetic parameters: KM=28 uM for lacto-N-fucopentaose II; KM=6.2 uM for 3-fucosyllactose; pH dependence: Optimum pH is 5. Activity decreases sharply toward pH 7; fucosidase. Sequence=AAC98456.1; Type=Erroneous gene model prediction; Evidence=; sp|Q8GW72|FUCO1_ARATH;evalue=3e-060; PctID=49.06; score=233.
       0.549
SCM58936.1
Putative secreted protein {ECO:0000313|EMBL:CEA15629,1}; tr|A0A098BY87|A0A098BY87_9PORP;evalue=3e-047; PctID=50.53; score=194.
       0.549
SCM58933.1
Putative transposase y4zB; sp|P55729|Y4ZB_RHISN;evalue=3e-023; PctID=34.43; score=110.
       0.424
Your Current Organism:
Petrimonas mucosa
NCBI taxonomy Id: 1642646
Other names: CECT 8611, DSM 28695, P. mucosa, Petrimonas mucosa Hahnke et al. 2016, Petrimonas sp. ING2-E5A, strain ING2 E5A, strain ING2-E5A
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