STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCM59307.1Putative membrane protein insertion efficiency factor {ECO:0000255|HAMAP-Rule:MF_00386}; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. (91 aa)    
Predicted Functional Partners:
rnpA
Ribonuclease P protein component {ECO:0000255|HAMAP-Rule:MF_00227}; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
  
  
 0.975
dtd3
D-aminoacyl-tRNA deacylase {ECO:0000255|HAMAP-ECO:0000305}; Catalyzes the hydrolysis of D-tyrosyl-tRNA(Tyr). tRNA. Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Evidence=; Name=Co(2+); Xref=ChEBI:CHEBI:48828; Evidence=; Name=Mn(2+); Xref=ChEBI:CHEBI:29035; Evidence=; Name=Ni(2+); Xref=ChEBI:CHEBI:49786; Evidence=; Note=The enzyme activity depends on the nature of the second cofactor. Enzyme containing simultaneously Zn(2+) and either Co(2+), Ni(2+) or Mn(2+) exhibits high activity. Enzyme containing two Zn(2+) is poorly active; Kinetic parameters: KM=0.8 uM for D-tyrosyl-tRNA(Tyr); Note=kcat is [...]
      0.966
yidC
Membrane protein insertase YidC {ECO:0000255|HAMAP-Rule:MF_01810}; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
  
  
 0.752
serS
Serine-tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00176}; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec). + L-seryl-tRNA(Ser). + L-seryl-tRNA(Sec). biosynthesis; L-seryl-tRNA(Sec) from L-serine and tRNA(Sec): step 1/1. N-terminal extension that is involved in tRNA binding. family. Type-1 seryl-tRNA synthetase subfamily; sp|Q2S1G4|SYS_SALRD;evalue=1e-117; PctID=50.94; score=423.
  
    0.689
secE
Preprotein translocase, SecE subunit {ECO:0000313|EMBL:EGK00888,1}; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
   
    0.686
rho
Transcription termination factor Rho {ECO:0000255|HAMAP-Rule:MF_01884}; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
  
    0.633
hemD
Uroporphyrinogen-III synthase (HemD) {ECO:0000313|EMBL:CEA14931,1}; tr|A0A098BW95|A0A098BW95_9PORP;evalue=7e-106; PctID=74.90; score=389.
       0.576
SCM58150.1
Putative protein {ECO:0000313|EMBL:EKA78623,1}; tr|K1G5S6|K1G5S6_BACFG;evalue=6e-094; PctID=46.21; score=351.
  
    0.557
SCM59393.1
Putative methylase RP545; sp|Q9ZD05|Y545_RICPR;evalue=1e-009; PctID=39.51; score=63.2.
  
    0.557
SCM59310.1
Putative membrane protein {ECO:0000313|EMBL:CEA14929,1}; tr|A0A098BW99|A0A098BW99_9PORP;evalue=2e-035; PctID=30.30; score=155.
       0.556
Your Current Organism:
Petrimonas mucosa
NCBI taxonomy Id: 1642646
Other names: CECT 8611, DSM 28695, P. mucosa, Petrimonas mucosa Hahnke et al. 2016, Petrimonas sp. ING2-E5A, strain ING2 E5A, strain ING2-E5A
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