STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hemDUroporphyrinogen-III synthase (HemD) {ECO:0000313|EMBL:CEA14931,1}; tr|A0A098BW95|A0A098BW95_9PORP;evalue=7e-106; PctID=74.90; score=389. (255 aa)    
Predicted Functional Partners:
SCM59310.1
Putative membrane protein {ECO:0000313|EMBL:CEA14929,1}; tr|A0A098BW99|A0A098BW99_9PORP;evalue=2e-035; PctID=30.30; score=155.
       0.792
SCM57397.1
Putative protein {ECO:0000313|EMBL:CEA15158,1}; tr|A0A098BYB7|A0A098BYB7_9PORP;evalue=7e-075; PctID=66.50; score=285.
  
   
 0.769
SCM59099.1
DNA-directed RNA polymerase subunit omega {ECO:0000256|SAAS:SAAS00290656}; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
 
     0.767
rnpA
Ribonuclease P protein component {ECO:0000255|HAMAP-Rule:MF_00227}; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
 
     0.764
SCM57730.1
Putative protein {ECO:0000313|EMBL:CEA15996,1}; tr|A0A098C0P1|A0A098C0P1_9PORP;evalue=3e-046; PctID=67.67; score=190.
  
   
 0.743
SCM58222.1
Putative protein {ECO:0000313|EMBL:CEA15794,1}; tr|A0A098BYQ6|A0A098BYQ6_9PORP;evalue=6e-058; PctID=71.81; score=229.
  
     0.738
SCM59311.1
Putative cytokinin riboside 5'-monophosphate phosphoribohydrolase; Catalyzes the hydrolytic removal of ribose 5'-monophosphate from nitrogen N6-modified adenosines, the final step of bioactive cytokinin synthesis. cytokinin + D-ribose 5'-phosphate; sp|P48636|LOGH_PSEAE;evalue=4e-037; PctID=44.32; score=154.
       0.738
murF-2
UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase {ECO:0000255|HAMAP-Rule:MF_02019}; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
 
  
 0.731
SCM59577.1
Putative protein {ECO:0000313|EMBL:CEA15513,1}; tr|A0A098BZB6|A0A098BZB6_9PORP;evalue=1e-114; PctID=50.61; score=420.
  
     0.729
SCM59371.1
Putative protein {ECO:0000313|EMBL:CEA15000,1}; tr|A0A098BWG1|A0A098BWG1_9PORP;evalue=1e-079; PctID=57.20; score=302.
  
   
 0.726
Your Current Organism:
Petrimonas mucosa
NCBI taxonomy Id: 1642646
Other names: CECT 8611, DSM 28695, P. mucosa, Petrimonas mucosa Hahnke et al. 2016, Petrimonas sp. ING2-E5A, strain ING2 E5A, strain ING2-E5A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.