STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
p20Putative N-acetyltransferase p20; sp|P05332|YP20_BACLI;evalue=4e-007; PctID=25.36; score=54.3. (175 aa)    
Predicted Functional Partners:
CPA
N-carbamoylputrescine amidase; Involved in polyamine biosynthesis. CO(2) + NH(3). via agmatine pathway; putrescine from N-carbamoylputrescine (amidase route): step 1/1. ProRule:PRU00054}; sp|Q9XGI9|AGUB_SOLLC;evalue=1e-060; PctID=44.01; score=233.
    
  0.902
SCM59318.1
Putative chloride channel protein {ECO:0000313|EMBL:CEA15080,1}; tr|A0A098BWQ0|A0A098BWQ0_9PORP;evalue=0.0; PctID=63.01; score=738.
 
    0.821
recR
Recombination protein RecR {ECO:0000255|HAMAP-Rule:MF_00017}; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
  
    0.809
tsaC
Threonylcarbamoyl-AMP synthase {ECO:0000255|HAMAP-Rule:MF_01852}; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Catalyzes the conversion of L-threonine, HCO(3)(-)/CO(2) and ATP to give threonylcarbamoyl-AMP (TC-AMP) as the acyladenylate intermediate, with the release of diphosphate. threonylcarbamoyladenylate + diphosphate + H(2)O. Rule:MF_01852}; sp|Q3IDH7|TSAC_PSEHT;evalue=1e-018; PctID=33.14; score=92.8; Belongs to the SUA5 family.
       0.782
SCM59321.1
Putative protein {ECO:0000313|EMBL:CEA15083,1}; tr|A0A098BY54|A0A098BY54_9PORP;evalue=1e-020; PctID=38.85; score=105.
       0.775
SCM56758.1
Putative protein {ECO:0000313|EMBL:CEA16325,1}; tr|A0A098C0B0|A0A098C0B0_9PORP;evalue=3e-035; PctID=57.58; score=155.
  
    0.585
SCM57866.1
Putative protein {ECO:0000313|EMBL:CEA15684,1}; tr|A0A098BYE1|A0A098BYE1_9PORP;evalue=2e-058; PctID=40.43; score=233.
  
     0.585
SCM58213.1
Putative protein {ECO:0000313|EMBL:CEA15790,1}; tr|A0A098BYN5|A0A098BYN5_9PORP;evalue=2e-039; PctID=60.14; score=167.
 
    0.551
SCM55557.1
Putative protein {ECO:0000313|EMBL:CEA16988,1}; tr|A0A098C3J9|A0A098C3J9_9PORP;evalue=5e-008; PctID=55.17; score=63.2.
 
     0.542
rnc
Ribonuclease 3 {ECO:0000255|HAMAP-Rule:MF_00104}; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
    0.539
Your Current Organism:
Petrimonas mucosa
NCBI taxonomy Id: 1642646
Other names: CECT 8611, DSM 28695, P. mucosa, Petrimonas mucosa Hahnke et al. 2016, Petrimonas sp. ING2-E5A, strain ING2 E5A, strain ING2-E5A
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