STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCM59329.1Transposase domain protein {ECO:0000313|EMBL:BAR51016,1}; tr|A0A0E4FNF5|A0A0E4FNF5_TANFO;evalue=2e-123; PctID=68.91; score=448. (312 aa)    
Predicted Functional Partners:
SCM56254.1
Putative protein {ECO:0000313|EMBL:CEA15704,1}; tr|A0A098BYG1|A0A098BYG1_9PORP, tr|A0A098C2X9|A0A098C2X9_9PORP;evalue=6e-056; PctID=100.00; score=222.
  
     0.775
SCM59330.1
Transposase domain protein {ECO:0000313|EMBL:BAR51016,1}; tr|A0A0E4FNF5|A0A0E4FNF5_TANFO;evalue=6e-031; PctID=81.25; score=139.
      0.719
SCM55917.1
Transposase {ECO:0000313|EMBL:CEA15343,1}; tr|A0A098BYW1|A0A098BYW1_9PORP;evalue=5e-030; PctID=90.14; score=135.
  
     0.632
SCM59331.1
Sigma-70 region 2 {ECO:0000313|EMBL:AEW21168,1}; tr|G8UQ00|G8UQ00_TANFA;evalue=2e-064; PctID=68.18; score=250; Belongs to the sigma-70 factor family. ECF subfamily.
       0.441
pmbA
Metalloprotease involved in CcdA degradation. Suppresses the inhibitory activity of the carbon storage regulator (CsrA). for the maturation and secretion of the antibiotic bacteriocin microcin B17 (MccB17); sp|P0AFK0|PMBA_ECOLI,sp|P0AFK1|PMBA_ECO57;evalue=2e-034; PctID=25.30; score=147.
       0.415
tldD
Metalloprotease involved in CcdA degradation. Suppresses the inhibitory activity of the carbon storage regulator (CsrA). for the maturation and secretion of the antibiotic bacteriocin microcin B17 (MccB17); sp|P0AGG8|TLDD_ECOLI,sp|P0AGG9|TLDD_ECOL6, sp|P0AGH0|TLDD_SHIFL;evalue=7e-096; PctID=41.42; score=351.
       0.415
Your Current Organism:
Petrimonas mucosa
NCBI taxonomy Id: 1642646
Other names: CECT 8611, DSM 28695, P. mucosa, Petrimonas mucosa Hahnke et al. 2016, Petrimonas sp. ING2-E5A, strain ING2 E5A, strain ING2-E5A
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