STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
miaA2tRNA dimethylallyltransferase 2 {ECO:0000255|HAMAP-Rule:MF_00185}; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. (304 aa)    
Predicted Functional Partners:
miaA1
tRNA dimethylallyltransferase 1 {ECO:0000255|HAMAP-Rule:MF_00185}; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
  
  
 
0.926
ygcG
UPF0603 protein; sp|P55140|YGCG_ECOLI;evalue=7e-007; PctID=26.32; score=54.7.
       0.780
SCM59439.1
Putative protein {ECO:0000313|EMBL:ADY50594,1}; tr|F0SC09|F0SC09_PSESL;evalue=3e-029; PctID=47.45; score=133.
       0.775
lemA3
sp|A8AVK0|LEMA_STRGC;evalue=1e-015; PctID=35.34; score=82.8.
       0.702
hflX
GTPase HflX {ECO:0000255|HAMAP-Rule:MF_00900}; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.
  
  
 0.584
SCM59435.1
Putative protein {ECO:0000313|EMBL:CEA15070,1}; tr|A0A098BWN7|A0A098BWN7_9PORP;evalue=4e-101; PctID=50.94; score=375.
  
  
 0.578
pheT-3
Phenylalanine-tRNA ligase beta subunit {ECO:0000255|HAMAP-Rule:MF_00283}; sp|Q64T65|SYFB_BACFR;evalue=0.0; PctID=59.93; score=988; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
 
  
 0.569
miaB
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000255|HAMAP-Rule:MF_01864}; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
 
  
 0.563
lysA
Diaminopimelate decarboxylase {ECO:0000255|HAMAP-Rule:MF_02120}; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
       0.547
SCM57327.1
Putative pre-16S rRNA nuclease {ECO:0000255|HAMAP-Rule:MF_00651}; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
  
    0.529
Your Current Organism:
Petrimonas mucosa
NCBI taxonomy Id: 1642646
Other names: CECT 8611, DSM 28695, P. mucosa, Petrimonas mucosa Hahnke et al. 2016, Petrimonas sp. ING2-E5A, strain ING2 E5A, strain ING2-E5A
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