STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCM59540.1Putative transposase y4zB; sp|P55729|Y4ZB_RHISN;evalue=1e-021; PctID=31.82; score=104. (386 aa)    
Predicted Functional Partners:
SCM55917.1
Transposase {ECO:0000313|EMBL:CEA15343,1}; tr|A0A098BYW1|A0A098BYW1_9PORP;evalue=5e-030; PctID=90.14; score=135.
 
     0.562
SCM59541.1
Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis. Name=NAD(+); Xref=ChEBI:CHEBI:57540; Evidence=; biosynthesis; UDP-alpha-D-xylose from UDP-alpha-D-glucuronate: step 1/1; Single-pass type II membrane protein Event=Alternative splicing; Named isoforms=2; Name=1; IsoId=Q8VZC0-1; Name=2; IsoId=Q8VZC0-2; Sequence=VSP_046296; family. UDP-glucuronic acid decarboxylase subfamily; sp|Q8VZC0|UXS1_ARATH;evalue=9e-106; PctID=59.09; score=383.
       0.489
phoP
Member of the two-component regulatory system PhoP/PhoR involved in the regulation of alkaline phosphatase genes phoA and phoB and of phosphodiesterase; sp|P13792|PHOP_BACSU;evalue=6e-020; PctID=42.98; score=99.0.
       0.489
SCM59539.1
Putative protein {ECO:0000313|EMBL:BAR52018,1}; tr|A0A0E4FP30|A0A0E4FP30_TANFO;evalue=4e-107; PctID=60.26; score=394.
       0.409
Your Current Organism:
Petrimonas mucosa
NCBI taxonomy Id: 1642646
Other names: CECT 8611, DSM 28695, P. mucosa, Petrimonas mucosa Hahnke et al. 2016, Petrimonas sp. ING2-E5A, strain ING2 E5A, strain ING2-E5A
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