SCM59716.1 protein (Petrimonas mucosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SCM59716.1

Putative protein {ECO:0000313|EMBL:EDM34755,1}; tr|A6EIM9|A6EIM9_9SPHI;evalue=5e-059; PctID=53.18; score=234. (347 aa)

Predicted Functional Partners:

susC81

0.704

SCM59717.1

0.703

SCM59719.1

0.653

Your Current Organism:

Petrimonas mucosa

NCBI taxonomy Id: 1642646
Other names: CECT 8611, DSM 28695, P. mucosa, Petrimonas mucosa Hahnke et al. 2016, Petrimonas sp. ING2-E5A, strain ING2 E5A, strain ING2-E5A

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SCM59716.1	SCM59717.1	ING2E5A_2921	ING2E5A_2922	Putative protein {ECO:0000313\|EMBL:EDM34755,1}; tr\|A6EIM9\|A6EIM9_9SPHI;evalue=5e-059; PctID=53.18; score=234.	Putative protein {ECO:0000313\|EMBL:EDM34754,1}; tr\|A6EIM8\|A6EIM8_9SPHI;evalue=0.0; PctID=54.16; score=743.	0.703
SCM59716.1	SCM59719.1	ING2E5A_2921	ING2E5A_2924	Putative protein {ECO:0000313\|EMBL:EDM34755,1}; tr\|A6EIM9\|A6EIM9_9SPHI;evalue=5e-059; PctID=53.18; score=234.	Putative protein {ECO:0000313\|EMBL:EES69051,2}; tr\|C6IIQ2\|C6IIQ2_9BACE,tr\|D7IHH0\|D7IHH0_9BACE, tr\|Q8A2K7\|Q8A2K7_BACTN, tr\|R9H4D8\|R9H4D8_BACT4;evalue=5e-091; PctID=43.82; score=342.	0.653
SCM59716.1	susC81	ING2E5A_2921	ING2E5A_2923	Putative protein {ECO:0000313\|EMBL:EDM34755,1}; tr\|A6EIM9\|A6EIM9_9SPHI;evalue=5e-059; PctID=53.18; score=234.	TonB-dependent receptor SusC; Mediates transport of starch oligosaccharides from the surface of the outer membrane to the periplasm for subsequent degradation. pass membrane protein Sequence=AAA95938.1; Type=Frameshift; Positions=374, 380, 714, 724, 745; Evidence=; sp\|Q8A1G1\|SUSC_BACTN;evalue=1e-037; PctID=27.96; score=159.	0.704
SCM59717.1	SCM59716.1	ING2E5A_2922	ING2E5A_2921	Putative protein {ECO:0000313\|EMBL:EDM34754,1}; tr\|A6EIM8\|A6EIM8_9SPHI;evalue=0.0; PctID=54.16; score=743.	Putative protein {ECO:0000313\|EMBL:EDM34755,1}; tr\|A6EIM9\|A6EIM9_9SPHI;evalue=5e-059; PctID=53.18; score=234.	0.703
SCM59717.1	SCM59719.1	ING2E5A_2922	ING2E5A_2924	Putative protein {ECO:0000313\|EMBL:EDM34754,1}; tr\|A6EIM8\|A6EIM8_9SPHI;evalue=0.0; PctID=54.16; score=743.	Putative protein {ECO:0000313\|EMBL:EES69051,2}; tr\|C6IIQ2\|C6IIQ2_9BACE,tr\|D7IHH0\|D7IHH0_9BACE, tr\|Q8A2K7\|Q8A2K7_BACTN, tr\|R9H4D8\|R9H4D8_BACT4;evalue=5e-091; PctID=43.82; score=342.	0.917
SCM59717.1	susC81	ING2E5A_2922	ING2E5A_2923	Putative protein {ECO:0000313\|EMBL:EDM34754,1}; tr\|A6EIM8\|A6EIM8_9SPHI;evalue=0.0; PctID=54.16; score=743.	TonB-dependent receptor SusC; Mediates transport of starch oligosaccharides from the surface of the outer membrane to the periplasm for subsequent degradation. pass membrane protein Sequence=AAA95938.1; Type=Frameshift; Positions=374, 380, 714, 724, 745; Evidence=; sp\|Q8A1G1\|SUSC_BACTN;evalue=1e-037; PctID=27.96; score=159.	0.951
SCM59719.1	SCM59716.1	ING2E5A_2924	ING2E5A_2921	Putative protein {ECO:0000313\|EMBL:EES69051,2}; tr\|C6IIQ2\|C6IIQ2_9BACE,tr\|D7IHH0\|D7IHH0_9BACE, tr\|Q8A2K7\|Q8A2K7_BACTN, tr\|R9H4D8\|R9H4D8_BACT4;evalue=5e-091; PctID=43.82; score=342.	Putative protein {ECO:0000313\|EMBL:EDM34755,1}; tr\|A6EIM9\|A6EIM9_9SPHI;evalue=5e-059; PctID=53.18; score=234.	0.653
SCM59719.1	SCM59717.1	ING2E5A_2924	ING2E5A_2922	Putative protein {ECO:0000313\|EMBL:EES69051,2}; tr\|C6IIQ2\|C6IIQ2_9BACE,tr\|D7IHH0\|D7IHH0_9BACE, tr\|Q8A2K7\|Q8A2K7_BACTN, tr\|R9H4D8\|R9H4D8_BACT4;evalue=5e-091; PctID=43.82; score=342.	Putative protein {ECO:0000313\|EMBL:EDM34754,1}; tr\|A6EIM8\|A6EIM8_9SPHI;evalue=0.0; PctID=54.16; score=743.	0.917
SCM59719.1	susC81	ING2E5A_2924	ING2E5A_2923	Putative protein {ECO:0000313\|EMBL:EES69051,2}; tr\|C6IIQ2\|C6IIQ2_9BACE,tr\|D7IHH0\|D7IHH0_9BACE, tr\|Q8A2K7\|Q8A2K7_BACTN, tr\|R9H4D8\|R9H4D8_BACT4;evalue=5e-091; PctID=43.82; score=342.	TonB-dependent receptor SusC; Mediates transport of starch oligosaccharides from the surface of the outer membrane to the periplasm for subsequent degradation. pass membrane protein Sequence=AAA95938.1; Type=Frameshift; Positions=374, 380, 714, 724, 745; Evidence=; sp\|Q8A1G1\|SUSC_BACTN;evalue=1e-037; PctID=27.96; score=159.	0.913
susC81	SCM59716.1	ING2E5A_2923	ING2E5A_2921	TonB-dependent receptor SusC; Mediates transport of starch oligosaccharides from the surface of the outer membrane to the periplasm for subsequent degradation. pass membrane protein Sequence=AAA95938.1; Type=Frameshift; Positions=374, 380, 714, 724, 745; Evidence=; sp\|Q8A1G1\|SUSC_BACTN;evalue=1e-037; PctID=27.96; score=159.	Putative protein {ECO:0000313\|EMBL:EDM34755,1}; tr\|A6EIM9\|A6EIM9_9SPHI;evalue=5e-059; PctID=53.18; score=234.	0.704
susC81	SCM59717.1	ING2E5A_2923	ING2E5A_2922	TonB-dependent receptor SusC; Mediates transport of starch oligosaccharides from the surface of the outer membrane to the periplasm for subsequent degradation. pass membrane protein Sequence=AAA95938.1; Type=Frameshift; Positions=374, 380, 714, 724, 745; Evidence=; sp\|Q8A1G1\|SUSC_BACTN;evalue=1e-037; PctID=27.96; score=159.	Putative protein {ECO:0000313\|EMBL:EDM34754,1}; tr\|A6EIM8\|A6EIM8_9SPHI;evalue=0.0; PctID=54.16; score=743.	0.951
susC81	SCM59719.1	ING2E5A_2923	ING2E5A_2924	TonB-dependent receptor SusC; Mediates transport of starch oligosaccharides from the surface of the outer membrane to the periplasm for subsequent degradation. pass membrane protein Sequence=AAA95938.1; Type=Frameshift; Positions=374, 380, 714, 724, 745; Evidence=; sp\|Q8A1G1\|SUSC_BACTN;evalue=1e-037; PctID=27.96; score=159.	Putative protein {ECO:0000313\|EMBL:EES69051,2}; tr\|C6IIQ2\|C6IIQ2_9BACE,tr\|D7IHH0\|D7IHH0_9BACE, tr\|Q8A2K7\|Q8A2K7_BACTN, tr\|R9H4D8\|R9H4D8_BACT4;evalue=5e-091; PctID=43.82; score=342.	0.913

Network Stats

number of nodes:

11

number of edges:

55

average node degree:

10

avg. local clustering coefficient:

1

expected number of edges:

17

PPI enrichment p-value:

4.2e-13

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0044205

De novo UMP biosynthetic process

6 of 6

1.98

3.2

7.78e-08

GO:0006207

De novo pyrimidine nucleobase biosynthetic process

5 of 5

1.98

2.96

3.44e-07

GO:0046112

Nucleobase biosynthetic process

6 of 9

1.81

2.91

7.78e-08

GO:0006221

Pyrimidine nucleotide biosynthetic process

7 of 14

1.68

2.67

7.78e-08

GO:0009156

Ribonucleoside monophosphate biosynthetic process

7 of 27

1.4

1.99

2.15e-07

(more ...)

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:769

De novo UMP biosynthetic process

5 of 5

1.98

2.94

3.78e-07

CL:738

Ribonucleoside monophosphate biosynthetic process

8 of 22

1.54

2.61

5.05e-09

CL:735

Ribonucleoside monophosphate biosynthetic process, and Glutamine family amino acid metabolic process

9 of 42

1.32

2.0

5.05e-09

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00240

Pyrimidine metabolism

8 of 21

1.57

2.76

1.40e-09

map00250

Alanine, aspartate and glutamate metabolism

5 of 19

1.4

1.51

6.76e-05

map01100

Metabolic pathways

10 of 344

0.45

0.36

0.0032

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0665

Pyrimidine biosynthesis

4 of 5

1.89

1.96

7.62e-05

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

Server load: low (28%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Fusion

Textmining

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About