STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppdKPyruvate, phosphate dikinase; Catalyzes the reversible phosphorylation of pyruvate and phosphate. In E.histolytica and C.symbiosus, PPDK functions in the direction of ATP synthesis. phosphoenolpyruvate + diphosphate. Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Evidence=; Inhibited by dark-induced phosphorylation. Both reactions are catalyzed by PDRP1 (By similarity). the central domain the pyrophosphate/phosphate carrier histidine, and the C-terminal domain the pyruvate binding site. enzyme. Dephosphorylation upon light stimulation reactivates the enzyme (By similarity). mediated by a carrier [...] (905 aa)    
Predicted Functional Partners:
nifJ
Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. CoA + CO(2) + reduced flavodoxin. Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; Evidence=; Note=Binds 3 [4Fe-4S] clusters per subunit; sp|P03833|NIFJ_KLEPN;evalue=0.0; PctID=57.00; score=1316.
    
 0.961
maeB
NADP-dependent malic enzyme; sp|Q9ZFV8|MAO2_SALTY;evalue=0.0; PctID=47.50; score=649.
  
 
 0.933
pycB1
Pyruvate carboxylase catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. oxaloacetate. Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Name=Mn(2+); Xref=ChEBI:CHEBI:29035; Name=Co(2+); Xref=ChEBI:CHEBI:48828; exceeded the ATP one, and by high concentration of ATP and alpha-ketoglutarate. pH dependence: Optimum pH is 8.5; Temperature dependence: Optimum temperature is 80-90 degrees Celsius.; Evidence=; sp|Q58628|PYCB_METJA;evalue=1e-031; PctID=38.28; score=138.
  
 
 0.931
korA
2-oxoglutarate oxidoreductase subunit KorA; Component of KG oxidoreductase (KOR) that catalyzes the CoA-dependent oxidative decarboxylation of 2-oxoglutarate (alpha-ketoglutarate, KG) to succinyl-CoA. Methyl viologen can act as electron acceptor in vitro; the physiologic electron acceptor is unknown. Is involved in the alternative TCA pathway that functions concurrently with fatty acid beta-oxidation. Since a growing body of evidence indicates that lipids (for example cholesterol and fatty acids) are a predominant growth substrate for M.tuberculosis during infection, flux through KOR l [...]
    
 0.931
pycB3
Pyruvate carboxylase catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. oxaloacetate. Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Name=Mn(2+); Xref=ChEBI:CHEBI:29035; Name=Co(2+); Xref=ChEBI:CHEBI:48828; exceeded the ATP one, and by high concentration of ATP and alpha-ketoglutarate. pH dependence: Optimum pH is 8.5; Temperature dependence: Optimum temperature is 80-90 degrees Celsius.; Evidence=; sp|Q58628|PYCB_METJA;evalue=1e-028; PctID=32.58; score=128.
  
 
 0.931
eno
Enolase {ECO:0000255|HAMAP-Rule:MF_00318}; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
   
 0.923
pckA
Phosphoenolpyruvate carboxykinase [ATP] {ECO:0000255|HAMAP-Rule:MF_00453}; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA.
     
 0.911
vorB
Ketoisovalerate oxidoreductase subunit VorB; sp|O26800|VORB_METTH;evalue=6e-087; PctID=51.14; score=321.
    
 0.911
vorA1
Ketoisovalerate oxidoreductase subunit VorA; sp|P80907|VORA_METTM;evalue=9e-057; PctID=48.46; score=220.
    
 0.911
korB
2-oxoglutarate oxidoreductase subunit KorB; Component of KG oxidoreductase (KOR) that catalyzes the CoA-dependent oxidative decarboxylation of 2-oxoglutarate (alpha-ketoglutarate, KG) to succinyl-CoA. Methyl viologen can act as electron acceptor in vitro; the physiologic electron acceptor is unknown. Is involved in the alternative TCA pathway that functions concurrently with fatty acid beta-oxidation. Since a growing body of evidence indicates that lipids (for example cholesterol and fatty acids) are a predominant growth substrate for M.tuberculosis during infection, flux through KOR l [...]
    
 0.911
Your Current Organism:
Petrimonas mucosa
NCBI taxonomy Id: 1642646
Other names: CECT 8611, DSM 28695, P. mucosa, Petrimonas mucosa Hahnke et al. 2016, Petrimonas sp. ING2-E5A, strain ING2 E5A, strain ING2-E5A
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