STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSM36_0015Hypothetical protein; High confidence in function and specificity. (648 aa)    
Predicted Functional Partners:
PSM36_0017
Hypothetical protein; High confidence in function and specificity.
 
     0.830
PSM36_0011
Domain of unknown function; High confidence in function and specificity.
 
     0.816
PSM36_0013
Putative beta-Glucocerebrosidase; This domain is found in bacteria, archaea and eukaryotes. This domain is typically between 320 to 354 amino acids in length. This domain is found associated with PF04685. This domain is found in the protein beta-Glucocerebrosidase 2. It is found just after the extreme N terminus. This protein is located in the ER. The N terminal is thought to be the luminal domain while the C terminal is the cytosolic domain. The catalytic domain of GBA-2 is unknown; High confidence in function and specificity.
 
     0.816
PSM36_0014
Hypothetical protein; High confidence in function and specificity.
 
    
0.716
PSM36_3095
Putative lipoprotein; High confidence in function and specificity.
  
     0.699
PSM36_0080
Hypothetical protein; High confidence in function and specificity.
  
     0.678
PSM36_3093
Hypothetical protein; High confidence in function and specificity.
  
     0.676
PSM36_2616
Putative mannan endo-1,6-alpha-mannosidase; Random hydrolysis of (1->6)-alpha-D-mannosidic linkages in unbranched (1->6)-mannans; High confidence in function and specificity.
  
     0.616
PSM36_0008
This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). [...]
 
     0.602
PSM36_3091
This family includes several hypothetical proteins. It also contains RagB, a protein involved in signalling and SusD, an outer membrane protein involved in nutrient binding; High confidence in function and specificity.
  
     0.598
Your Current Organism:
Proteiniphilum saccharofermentans
NCBI taxonomy Id: 1642647
Other names: CECT 8610, DSM 28694, LMG 28299, LMG:28299, P. saccharofermentans, Proteiniphilum saccharofermentans Hahnke et al. 2016, Proteiniphilum sp. M3/6, strain M3/6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.