Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PSM36_0126 | PSM36_0127 | PSM36_0126 | PSM36_0127 | This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). [...] | RagB/SusD domain protein; SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for [...] | 0.942 |
| PSM36_0126 | PSM36_0128 | PSM36_0126 | PSM36_0128 | This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). [...] | Hypothetical protein; High confidence in function and specificity. | 0.675 |
| PSM36_0126 | PSM36_0129 | PSM36_0126 | PSM36_0129 | This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). [...] | Licheninase; Hydrolysis of (1->4)-beta-D-glucosidic linkages in beta-D-glucans containing (1->3)-and (1->4)-bonds; High confidence in function and specificity. | 0.605 |
| PSM36_0126 | PSM36_0130 | PSM36_0126 | PSM36_0130 | This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). [...] | Beta-glucosidase; Hydrolysis of terminal, non-reducing beta-D-glucosyl residues with release of beta-D-glucose; High confidence in function and specificity. | 0.405 |
| PSM36_0127 | PSM36_0126 | PSM36_0127 | PSM36_0126 | RagB/SusD domain protein; SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for [...] | This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). [...] | 0.942 |
| PSM36_0127 | PSM36_0128 | PSM36_0127 | PSM36_0128 | RagB/SusD domain protein; SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for [...] | Hypothetical protein; High confidence in function and specificity. | 0.733 |
| PSM36_0127 | PSM36_0129 | PSM36_0127 | PSM36_0129 | RagB/SusD domain protein; SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for [...] | Licheninase; Hydrolysis of (1->4)-beta-D-glucosidic linkages in beta-D-glucans containing (1->3)-and (1->4)-bonds; High confidence in function and specificity. | 0.668 |
| PSM36_0128 | PSM36_0126 | PSM36_0128 | PSM36_0126 | Hypothetical protein; High confidence in function and specificity. | This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). [...] | 0.675 |
| PSM36_0128 | PSM36_0127 | PSM36_0128 | PSM36_0127 | Hypothetical protein; High confidence in function and specificity. | RagB/SusD domain protein; SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for [...] | 0.733 |
| PSM36_0128 | PSM36_0129 | PSM36_0128 | PSM36_0129 | Hypothetical protein; High confidence in function and specificity. | Licheninase; Hydrolysis of (1->4)-beta-D-glucosidic linkages in beta-D-glucans containing (1->3)-and (1->4)-bonds; High confidence in function and specificity. | 0.623 |
| PSM36_0129 | PSM36_0126 | PSM36_0129 | PSM36_0126 | Licheninase; Hydrolysis of (1->4)-beta-D-glucosidic linkages in beta-D-glucans containing (1->3)-and (1->4)-bonds; High confidence in function and specificity. | This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). [...] | 0.605 |
| PSM36_0129 | PSM36_0127 | PSM36_0129 | PSM36_0127 | Licheninase; Hydrolysis of (1->4)-beta-D-glucosidic linkages in beta-D-glucans containing (1->3)-and (1->4)-bonds; High confidence in function and specificity. | RagB/SusD domain protein; SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for [...] | 0.668 |
| PSM36_0129 | PSM36_0128 | PSM36_0129 | PSM36_0128 | Licheninase; Hydrolysis of (1->4)-beta-D-glucosidic linkages in beta-D-glucans containing (1->3)-and (1->4)-bonds; High confidence in function and specificity. | Hypothetical protein; High confidence in function and specificity. | 0.623 |
| PSM36_0129 | PSM36_0130 | PSM36_0129 | PSM36_0130 | Licheninase; Hydrolysis of (1->4)-beta-D-glucosidic linkages in beta-D-glucans containing (1->3)-and (1->4)-bonds; High confidence in function and specificity. | Beta-glucosidase; Hydrolysis of terminal, non-reducing beta-D-glucosyl residues with release of beta-D-glucose; High confidence in function and specificity. | 0.676 |
| PSM36_0129 | PSM36_0634 | PSM36_0129 | PSM36_0634 | Licheninase; Hydrolysis of (1->4)-beta-D-glucosidic linkages in beta-D-glucans containing (1->3)-and (1->4)-bonds; High confidence in function and specificity. | Putative glucosylceramidase; D-glucosyl-N-acylsphingosine + H2O
ightleftharpoons D-glucose + N-acylsphingosine; High confidence in function and specificity; Belongs to the glycosyl hydrolase 30 family. | 0.418 |
| PSM36_0129 | PSM36_1291 | PSM36_0129 | PSM36_1291 | Licheninase; Hydrolysis of (1->4)-beta-D-glucosidic linkages in beta-D-glucans containing (1->3)-and (1->4)-bonds; High confidence in function and specificity. | The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, glycerophosphodiester phosphodiesterases (GP-GDE, sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi; High confidence in function and sp [...] | 0.887 |
| PSM36_0129 | PSM36_3364 | PSM36_0129 | PSM36_3364 | Licheninase; Hydrolysis of (1->4)-beta-D-glucosidic linkages in beta-D-glucans containing (1->3)-and (1->4)-bonds; High confidence in function and specificity. | Beta-glucosidase; Hydrolysis of terminal, non-reducing beta-D-glucosyl residues with release of beta-D-glucose; High confidence in function and specificity; Belongs to the glycosyl hydrolase 3 family. | 0.428 |
| PSM36_0129 | bglX | PSM36_0129 | PSM36_2575 | Licheninase; Hydrolysis of (1->4)-beta-D-glucosidic linkages in beta-D-glucans containing (1->3)-and (1->4)-bonds; High confidence in function and specificity. | Beta-glucosidase; Hydrolysis of terminal, non-reducing beta-D-glucosyl residues with release of beta-D-glucose; High confidence in function and specificity; Belongs to the glycosyl hydrolase 3 family. | 0.446 |
| PSM36_0130 | PSM36_0126 | PSM36_0130 | PSM36_0126 | Beta-glucosidase; Hydrolysis of terminal, non-reducing beta-D-glucosyl residues with release of beta-D-glucose; High confidence in function and specificity. | This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). [...] | 0.405 |
| PSM36_0130 | PSM36_0129 | PSM36_0130 | PSM36_0129 | Beta-glucosidase; Hydrolysis of terminal, non-reducing beta-D-glucosyl residues with release of beta-D-glucose; High confidence in function and specificity. | Licheninase; Hydrolysis of (1->4)-beta-D-glucosidic linkages in beta-D-glucans containing (1->3)-and (1->4)-bonds; High confidence in function and specificity. | 0.676 |
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