STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSM36_0139Hypothetical protein. (94 aa)    
Predicted Functional Partners:
PSM36_0138
Transposase IS4 family protein; Transposase [Mobilome: prophages, transposons]; High confidence in function and specificity.
       0.664
PSM36_0137
Hypothetical protein.
       0.646
PSM36_0547
GDSL-like Lipase/Acylhydrolase family; This family of presumed lipases and related enzymes are; High confidence in function and specificity.
 
     0.636
PSM36_0086
This family consists of phosphodiesterases, including human plasma-cell membrane glycoprotein PC-1 / alkaline phosphodiesterase i / nucleotide pyrophosphatase (nppase). These enzymes catalyse the cleavage of phosphodiester and phosphosulfate bonds in NAD, deoxynucleotides and nucleotide sugars. Also in this family is ATX an autotaxin, tumor cell motility-stimulating protein which exhibits type I phosphodiesterases activity. The alignment encompasses the active site. Also present with in this family is 60-kDa Ca2+-ATPase form F. odoratum; High confidence in function and specificity.
  
    0.574
PSM36_2018
Cellulose 1,4-beta-cellobiosidase; Glycoside hydrolase family 9 CAZY GH_9 comprises enzymes with several known activities including endoglucanase and cellobiohydrolase; High confidence in function and specificity.
 
    0.565
PSM36_2234
Cyclically-permuted mutarotase; Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat; High confidence in function and specificity.
  
     0.545
PSM36_0140
Oxidoreductase domain-containing protein; Predicted dehydrogenase [General function prediction only]; High confidence in function and specificity.
 
     0.523
PSM36_3149
Glycosaminoglycan (GAG) polysaccharide lyase family. This family consists of a group of secreted bacterial lyase enzymes capable of acting on glycosaminoglycans, such as hyaluronan and chondroitin, in the extracellular matrix of host tissues, contributing to the invasive capacity of the pathogen. These are broad-specificity glycosaminoglycan lyases which recognize uronyl residues in polysaccharides and cleave their glycosidic bonds via a beta-elimination reaction to form a double bond between C-4 and C-5 of the non-reducing terminal uronyl residues of released products. Substrates incl [...]
  
   
 0.512
PSM36_0017
Hypothetical protein; High confidence in function and specificity.
  
     0.480
PSM36_1142
GDSL-like Lipase/Acylhydrolase family; High confidence in function and specificity.
 
     0.480
Your Current Organism:
Proteiniphilum saccharofermentans
NCBI taxonomy Id: 1642647
Other names: CECT 8610, DSM 28694, LMG 28299, LMG:28299, P. saccharofermentans, Proteiniphilum saccharofermentans Hahnke et al. 2016, Proteiniphilum sp. M3/6, strain M3/6
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