STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSM36_0146This TIM alpha/beta barrel structure is found in xylose isomerase and in endonuclease IV. This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae; High confidence in function and specificity. (329 aa)    
Predicted Functional Partners:
PSM36_1238
Oxidoreductase domain protein; Predicted dehydrogenase [General function prediction only]; High confidence in function and specificity.
 
  
 0.819
PSM36_0144
Type 1 glutamine amidotransferase; High confidence in function and specificity.
 
   
 0.779
PSM36_0145
Oxidoreductase family; This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose-fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism; High confidence in function and specificity.
 
    0.635
PSM36_1675
This TIM alpha/beta barrel structure is found in xylose isomerase and in endonuclease IV. This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae; High confidence in function and specificity.
 
     0.440
PSM36_3065
Hypothetical protein; High confidence in function and specificity.
 
     0.436
PSM36_1546
Hypothetical protein; High confidence in function and specificity.
 
     0.428
PSM36_0147
Members of this family are alpha-1,2-mannosidases, enzymes which remove alpha-1,2-linked mannose residues from Man(9)(GlcNAc)(2) by hydrolysis. They are critical for the maturation of N-linked oligosaccharides and ER-associated degradation; High confidence in function and specificity.
       0.412
PSM36_0148
Putative glycosyl hydrolase family 65; This domain represents a domain found to the N-terminus of the glycosyl hydrolase 65 family catalytic domain; High confidence in function and specificity.
       0.412
Your Current Organism:
Proteiniphilum saccharofermentans
NCBI taxonomy Id: 1642647
Other names: CECT 8610, DSM 28694, LMG 28299, LMG:28299, P. saccharofermentans, Proteiniphilum saccharofermentans Hahnke et al. 2016, Proteiniphilum sp. M3/6, strain M3/6
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