STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSM36_0745Helix-turn-helix domain; High confidence in function and specificity. (301 aa)    
Predicted Functional Partners:
PSM36_0747
Putative conserved protein YurZ; High confidence in function and specificity.
 
   
 0.646
PSM36_0749
Cupin superfamily protein; This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel); High confidence in function and specificity.
 
   0.605
PSM36_0746
Helix-turn-helix domain; High confidence in function and specificity.
 
  
 0.589
PSM36_0748
Hypothetical protein; Family membership.
 
     0.490
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.442
PSM36_2162
Transcriptional regulator; High confidence in function and specificity.
  
     0.416
Your Current Organism:
Proteiniphilum saccharofermentans
NCBI taxonomy Id: 1642647
Other names: CECT 8610, DSM 28694, LMG 28299, LMG:28299, P. saccharofermentans, Proteiniphilum saccharofermentans Hahnke et al. 2016, Proteiniphilum sp. M3/6, strain M3/6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.