STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSM36_1008Putative membrane protein. (160 aa)    
Predicted Functional Partners:
PSM36_1007
MotA/TolQ/ExbB proton channel family protein; Biopolymer transport protein ExbB/TolQ [Intracellular trafficking, secretion, and vesicular transport]; High confidence in function and specificity.
  
    0.821
PSM36_1009
Hypothetical protein; High confidence in function and specificity.
  
    0.699
PSM36_1010
This group of proteins are membrane bound transport proteins essential for ferric ion uptake in bacteria. The Pfam family consists of ExbD, and TolR which are involved in TonB-dependent transport of various receptor bound substrates including colicins; High confidence in function and specificity.
  
    0.608
PSM36_1005
TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity; High confidence in function and specificity.
       0.458
PSM36_1004
Hypothetical protein; High confidence in function and specificity.
       0.419
Your Current Organism:
Proteiniphilum saccharofermentans
NCBI taxonomy Id: 1642647
Other names: CECT 8610, DSM 28694, LMG 28299, LMG:28299, P. saccharofermentans, Proteiniphilum saccharofermentans Hahnke et al. 2016, Proteiniphilum sp. M3/6, strain M3/6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.