STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSM36_1376IS66 Orf2 like protein; Family membership. (77 aa)    
Predicted Functional Partners:
PSM36_1377
Hypothetical protein; Family membership.
      0.782
PSM36_1378
TIGR02646 family protein.
       0.655
PSM36_1379
Predicted ATP-binding protein involved in virulence [General function prediction only]; Family membership.
       0.655
PSM36_0149
Hypothetical protein; High confidence in function and specificity.
  
     0.511
PSM36_2483
SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large varie [...]
  
     0.490
PSM36_0376
Hypothetical protein; High confidence in function and specificity.
  
     0.446
PSM36_1846
Hypothetical protein; High confidence in function and specificity.
  
     0.436
PSM36_1186
Putative Beta-L-arabinofuranosidase; Beta-L-arabinofuranosyl-(1->2)-beta-L- arabinofuranose + H(2)O <=> 2 beta-L-arabinofuranose; Family membership.
  
     0.433
PSM36_3000
Tetratricopeptide repeat protein; High confidence in function and specificity.
  
     0.429
PSM36_0872
Putative secreted protein.
  
     0.426
Your Current Organism:
Proteiniphilum saccharofermentans
NCBI taxonomy Id: 1642647
Other names: CECT 8610, DSM 28694, LMG 28299, LMG:28299, P. saccharofermentans, Proteiniphilum saccharofermentans Hahnke et al. 2016, Proteiniphilum sp. M3/6, strain M3/6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.