STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSM36_2214Rhamnogalacturonyl hydrolase; 2-O-(4-deoxy-beta-L-threo-hex-4-enopyranuronosyl)- alpha-L-rhamnopyranose + H(2)O <=> 5-dehydro-4-deoxy-D-glucuronate + L-rhamnopyranose; High confidence in function and specificity. (399 aa)    
Predicted Functional Partners:
PSM36_3438
Putative lipoprotein; High confidence in function and specificity.
     0.941
PSM36_2219
Hypothetical protein; Belongs to the glycosyl hydrolase 2 family.
 
    0.648
PSM36_0950
Hypothetical protein; High confidence in function and specificity.
      0.640
PSM36_2221
Hypothetical proteina; High confidence in function and specificity.
 
    0.630
PSM36_2215
Hypothetical protein; Involved in the anomeric conversion of L-rhamnose.
 
     0.565
PSM36_2213
Oxidoreductase domain-containing protein; This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose-fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism; High confidence in function and specificity.
 
     0.559
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.541
PSM36_3422
Hypothetical protein; High confidence in function and specificity.
     0.519
PSM36_0923
Exo-poly-alpha-D-galacturonosidase; Hydrolysis of pectic acid from the non-reducing end, releasing digalacturonate; High confidence in function and specificity; Belongs to the glycosyl hydrolase 28 family.
  
 0.506
PSM36_2212
Hypothetical protein.
       0.497
Your Current Organism:
Proteiniphilum saccharofermentans
NCBI taxonomy Id: 1642647
Other names: CECT 8610, DSM 28694, LMG 28299, LMG:28299, P. saccharofermentans, Proteiniphilum saccharofermentans Hahnke et al. 2016, Proteiniphilum sp. M3/6, strain M3/6
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