STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSM36_2260Putative membrane protein. (87 aa)    
Predicted Functional Partners:
PSM36_2259
Divalent metal cation (Fe/Co/Zn/Cd) transporter [Inorganic ion transport and metabolism]; High confidence in function and specificity; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
       0.773
PSM36_2261
Hypothetical protein; High confidence in function and specificity.
       0.483
PSM36_2262
Hypothetical protein; High confidence in function and specificity.
       0.483
PSM36_2263
ATP-dependent helicase; High confidence in function and specificity.
       0.483
PSM36_2264
Predicted transcriptional regulator, contains HTH domain [Transcription]; High confidence in function and specificity.
       0.483
PSM36_2265
Hypothetical protein; High confidence in function and specificity.
       0.422
PSM36_2266
Hypothetical protein; High confidence in function and specificity.
       0.403
PSM36_2267
tRNA modification GTPase MnmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm5s2U34; Hypothetical protein.
       0.403
Your Current Organism:
Proteiniphilum saccharofermentans
NCBI taxonomy Id: 1642647
Other names: CECT 8610, DSM 28694, LMG 28299, LMG:28299, P. saccharofermentans, Proteiniphilum saccharofermentans Hahnke et al. 2016, Proteiniphilum sp. M3/6, strain M3/6
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