STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSM36_3350Outer membrane protein (OmpH-like); High confidence in function and specificity. (170 aa)    
Predicted Functional Partners:
PSM36_3352
BamA; Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis]; High confidence in function and specificity.
 
  
 0.852
PSM36_1336
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis]; High confidence in function and specificity.
 
   
 0.777
PSM36_3375
Hypothetical protein; High confidence in function and specificity.
  
    0.738
PSM36_2411
Hypothetical protein; High confidence in function and specificity.
  
     0.718
PSM36_0441
PPIC-type PPIASE domain; Rotamases increase the rate of protein folding by catalyzing the interconversion of cis-proline and trans-proline; High confidence in function and specificity.
 
  
 0.716
PSM36_0523
Hypothetical protein; High confidence in function and specificity.
  
     0.714
PSM36_1738
Putative permease YjgP/YjgQ family; Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long and contain about 6 transmembrane regions. They are predicted to be permeases although there is no verification of this; High confidence in function and specificity.
 
     0.699
PSM36_1265
SprA is a cell surface protein widely distributed in the Bacteroidetes lineage. In Flavobacterium johnsoniae, a species that shows gliding motility, mutation disrupts gliding; High confidence in function and specificity.
  
     0.692
PSM36_0181
Hypothetical protein; High confidence in function and specificity.
 
     0.674
PSM36_2918
Hypothetical protein; High confidence in function and specificity.
 
 
 0.672
Your Current Organism:
Proteiniphilum saccharofermentans
NCBI taxonomy Id: 1642647
Other names: CECT 8610, DSM 28694, LMG 28299, LMG:28299, P. saccharofermentans, Proteiniphilum saccharofermentans Hahnke et al. 2016, Proteiniphilum sp. M3/6, strain M3/6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.