STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSM36_3355Putative secreted protein. (449 aa)    
Predicted Functional Partners:
PSM36_3352
BamA; Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis]; High confidence in function and specificity.
  
 
 0.769
PSM36_3354
Outer membrane protein beta-barrel domain; High confidence in function and specificity.
  
  
 0.643
uppS
Isoprenyl transferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
    0.618
PSM36_3356
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
       0.587
PSM36_1336
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis]; High confidence in function and specificity.
   
 
 0.568
PSM36_1273
Outer membrane protein assembly factor BamA; High confidence in function and specificity.
  
 
 0.548
PSM36_0441
PPIC-type PPIASE domain; Rotamases increase the rate of protein folding by catalyzing the interconversion of cis-proline and trans-proline; High confidence in function and specificity.
   
 
 0.479
PSM36_2997
Hypothetical protein; High confidence in function and specificity.
   
 
 0.479
recX
Recombination regulator RecX; Modulates RecA activity; Belongs to the RecX family.
     
 0.444
prmC
protein-(glutamine-N5) methyltransferase; Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. [Protein fate, Protein modifi [...]
       0.438
Your Current Organism:
Proteiniphilum saccharofermentans
NCBI taxonomy Id: 1642647
Other names: CECT 8610, DSM 28694, LMG 28299, LMG:28299, P. saccharofermentans, Proteiniphilum saccharofermentans Hahnke et al. 2016, Proteiniphilum sp. M3/6, strain M3/6
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