STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSM36_3458ABC-type enterochelin transport system; Siderophore binding protein FatB. These proteins have been shown to function as ABC-type initial receptors in the siderophore-mediated iron uptake in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains; High confidence in function and specificity. (309 aa)    
Predicted Functional Partners:
PSM36_3461
ABC-type enterochelin transport system; High confidence in function and specificity; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.980
yclP
ABC-type enterochelin transport system; High confidence in function and specificity.
 
  
 0.979
PSM36_3460
Putative ABC transporter permease protein YclO; High confidence in function and specificity; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.976
PSM36_3457
Protein of unknown function DUF6 transmembrane; High confidence in function and specificity.
       0.774
PSM36_3456
alpha-L-fucosidase; An alpha-L-fucoside + H(2)O <=> L-fucose + an alcohol; High confidence in function and specificity.
       0.498
PSM36_1128
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism]; High confidence in function and specificity.
 
  
 0.481
Your Current Organism:
Proteiniphilum saccharofermentans
NCBI taxonomy Id: 1642647
Other names: CECT 8610, DSM 28694, LMG 28299, LMG:28299, P. saccharofermentans, Proteiniphilum saccharofermentans Hahnke et al. 2016, Proteiniphilum sp. M3/6, strain M3/6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.