STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3G4Y5_PHYRMUncharacterized protein. (362 aa)    
Predicted Functional Partners:
H3G9M1_PHYRM
Eukaryotic translation initiation factor 5A.
   
 0.998
H3HBR2_PHYRM
Uncharacterized protein.
   
 0.974
H3GH76_PHYRM
Deoxyhypusine hydroxylase; Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)-L- lysine intermediate to form hypusine, an essential post-translational modification only found in mature eIF-5A factor; Belongs to the deoxyhypusine hydroxylase family.
   
 0.828
H3GSJ6_PHYRM
Brix domain-containing protein.
 
 
    0.686
H3GA76_PHYRM
AA_TRNA_LIGASE_II domain-containing protein.
   
  
 0.665
H3H0V1_PHYRM
tRNA-binding domain-containing protein.
  
  
 0.626
H3H1S7_PHYRM
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
    0.603
H3GAA6_PHYRM
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
    0.534
H3HCD6_PHYRM
Uncharacterized protein.
   
   0.531
H3G780_PHYRM
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
    0.510
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.