STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3G4Y6_PHYRMPeptidase_S8 domain-containing protein. (415 aa)    
Predicted Functional Partners:
H3GQZ5_PHYRM
BZIP domain-containing protein.
     
 0.619
H3G6R1_PHYRM
Putative elicitin protein RAM6.
    
 0.542
H3GM20_PHYRM
Uncharacterized protein.
    
 0.542
H3GN10_PHYRM
Uncharacterized protein.
    
 0.542
H3H3N7_PHYRM
Uncharacterized protein.
    
 0.542
H3GJS8_PHYRM
Sushi domain-containing protein.
   
 0.536
H3H3K4_PHYRM
DUF4203 domain-containing protein.
    
 0.524
H3GWR0_PHYRM
TSPc domain-containing protein.
    
 0.484
H3GC02_PHYRM
FHA domain-containing protein.
     
 0.459
H3GXP3_PHYRM
Uncharacterized protein.
     
 0.459
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.