STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3G546_PHYRMtRNA (guanine(37)-N1)-methyltransferase; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding; Belongs to the TRM5 / TYW2 family. (339 aa)    
Predicted Functional Partners:
H3G991_PHYRM
Uncharacterized protein.
   
 
 0.771
H3GVW1_PHYRM
Uncharacterized protein.
   
 
 0.771
H3GAA3_PHYRM
Flavokinase domain-containing protein.
   
 
 0.709
H3HBF8_PHYRM
SAM_MT_TRM5_TYW2 domain-containing protein.
  
 
 0.684
H3GM91_PHYRM
Uncharacterized protein.
 
    
 0.611
H3GHR7_PHYRM
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
 
      0.604
H3H8Z2_PHYRM
Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.
 
      0.603
H3GBR9_PHYRM
TPR_REGION domain-containing protein.
   
    0.552
H3GSJ6_PHYRM
Brix domain-containing protein.
   
    0.541
H3GGQ6_PHYRM
WD_REPEATS_REGION domain-containing protein.
   
    0.526
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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